MmuEX0012632 @ mm10
Exon Skipping
Gene
ENSMUSG00000052955 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:MGI Symbol;Acc:MGI:1918537]
Coordinates
chr6:53926810-53947785:-
Coord C1 exon
chr6:53947719-53947785
Coord A exon
chr6:53932412-53932534
Coord C2 exon
chr6:53926810-53926908
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCAATGTCTGTCCTTCTCAGTCT
3' ss Score
8.11
5' ss Seq
TCGGTTGGT
5' ss Score
3.58
Exon sequences
Seq C1 exon
TGCCCTGATTCAGTTCTTCACGTTGTTTCCCGAGTATGCAAAGAATGATTTTTACGTCACTGGCGAG
Seq A exon
TCTTATGCAGGGAAATATGTTCCGGCCCTAGCACACTATATCCACTCCCTCAACCCCGTGCGGAAGTTCAAGATTCGCCTAAAAGGAATTGCCATTGGAGATGCATACACTGATCCTGAATCG
Seq C2 exon
ATCCTGGATAAGCTGCTAGATGGAGATGTAACAACTGGTTCATCTTTCTTCCAGAATGTGACAGGATGTACCAATTACTACAACATTTTACAGTGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052955_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(10.9=100)
A:
PF0045017=Peptidase_S10=FE(13.7=100)
C2:
PF0045017=Peptidase_S10=PD(9.5=57.6),PF0045017=Peptidase_S10=PU(16.4=87.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGATTCAGTTCTTCACGT
R:
CGTGCACTGTAAAATGTTGTAGT
Band lengths:
165-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types