Special

HsaEX6007599 @ hg19

Exon Skipping

Gene
Description
carboxypeptidase, vitellogenic-like [Source:HGNC Symbol;Acc:14399]
Coordinates
chr7:29111389-29126166:-
Coord C1 exon
chr7:29126100-29126166
Coord A exon
chr7:29111917-29112039
Coord C2 exon
chr7:29111389-29111520
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCAACATCTGTCCTTCTCAGTCT
3' ss Score
7.44
5' ss Seq
TCAGTAGGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
TGCACTAATTCAGTTTTTCCAGATATTTCCTGAATATAAAAATAATGACTTTTATGTCACTGGGGAG
Seq A exon
TCTTATGCAGGGAAATATGTGCCAGCCATTGCACACCTCATCCATTCCCTCAACCCTGTGAGAGAGGTGAAGATCAACCTGAACGGAATTGCTATTGGAGATGGATATTCTGATCCCGAATCA
Seq C2 exon
ATTATAGGGGGCTATGCAGAATTCCTGTACCAAATTGGCTTGTTGGATGAGAAGCAAAAAAAGTACTTCCAGAAGCAGTGCCATGAATGCATAGAACACATCAGGAAGCAGAACTGGTTTGAGGCCTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106066-'20-21,'20-19,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0045017=Peptidase_S10=FE(15.5=100)
A:
PF0045017=Peptidase_S10=FE(16.7=100)
C2:
PF0045017=Peptidase_S10=PU(13.5=92.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACTAATTCAGTTTTTCCAGAT
R:
AAGGCCTCAAACCAGTTCTGC
Band lengths:
195-318
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains