HsaEX6007599 @ hg19
Exon Skipping
Gene
ENSG00000106066 | CPVL
Description
carboxypeptidase, vitellogenic-like [Source:HGNC Symbol;Acc:14399]
Coordinates
chr7:29111389-29126166:-
Coord C1 exon
chr7:29126100-29126166
Coord A exon
chr7:29111917-29112039
Coord C2 exon
chr7:29111389-29111520
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCAACATCTGTCCTTCTCAGTCT
3' ss Score
7.44
5' ss Seq
TCAGTAGGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
TGCACTAATTCAGTTTTTCCAGATATTTCCTGAATATAAAAATAATGACTTTTATGTCACTGGGGAG
Seq A exon
TCTTATGCAGGGAAATATGTGCCAGCCATTGCACACCTCATCCATTCCCTCAACCCTGTGAGAGAGGTGAAGATCAACCTGAACGGAATTGCTATTGGAGATGGATATTCTGATCCCGAATCA
Seq C2 exon
ATTATAGGGGGCTATGCAGAATTCCTGTACCAAATTGGCTTGTTGGATGAGAAGCAAAAAAAGTACTTCCAGAAGCAGTGCCATGAATGCATAGAACACATCAGGAAGCAGAACTGGTTTGAGGCCTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106066-'20-21,'20-19,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(15.5=100)
A:
PF0045017=Peptidase_S10=FE(16.7=100)
C2:
PF0045017=Peptidase_S10=PU(13.5=92.0)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACTAATTCAGTTTTTCCAGAT
R:
AAGGCCTCAAACCAGTTCTGC
Band lengths:
195-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)