RnoEX6013624 @ rn6
Exon Skipping
Gene
ENSRNOG00000009172 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:RGD Symbol;Acc:1563609]
Coordinates
chr4:84087355-84100256:-
Coord C1 exon
chr4:84100190-84100256
Coord A exon
chr4:84087820-84087942
Coord C2 exon
chr4:84087355-84087486
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCAACATCTGTCCTTCTCAGTCT
3' ss Score
7.44
5' ss Seq
ACGGTTGGC
5' ss Score
2.85
Exon sequences
Seq C1 exon
TGCACTGGTTCAGTTTTTCAAGTTGTTTCCTGAGTACGCAAAGAATGACTTTTATATCACTGGCGAG
Seq A exon
TCTTATGCAGGGAAATATGTTCCGGCCATAGCATACTATATCCACTCCCTCAACCCCGTGCGAAGGTTCAAGATCCGCCTGAAAGGAATTGCCCTTGGAGATGCATACACTGATCCTGAAACG
Seq C2 exon
ATTATAGGAGGGTACGCGACATTCCTGTATGAAGTTGGCTTGTTGGATGAACAGCAGCGAAGGCACTTCCGGAAGCAGTGTCGAAAGTGCATAAAATACATCAAAGAGCAGGAGTGGATGAAGGCCTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009172-'17-15,'17-14,19-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(5.4=100)
A:
PF0045017=Peptidase_S10=FE(13.7=100)
C2:
PF0045017=Peptidase_S10=FE(10.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACTGGTTCAGTTTTTCAAGT
R:
TCAAAGGCCTTCATCCACTCC
Band lengths:
198-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]