DreEX0024094 @ danRer10
Exon Skipping
Gene
ENSDARG00000056480 | cpvl
Description
carboxypeptidase, vitellogenic-like [Source:ZFIN;Acc:ZDB-GENE-031219-2]
Coordinates
chr16:20698748-20702598:+
Coord C1 exon
chr16:20698748-20698814
Coord A exon
chr16:20698924-20699046
Coord C2 exon
chr16:20702467-20702598
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTATATTTGACATCTTTAGTCA
3' ss Score
4.76
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
TGCCCTGACTCAATTCTTCCAGATATTTAGGGAGTTCCAGTCAAATCCGTTTTATGCTACTGGCGAG
Seq A exon
TCATATGCAGGAAAGTATGTTCCAGCGATTGGCTACTACATCCACAGGAACAATCCCTCCGCTAAAGTGAAGATCAATTTTAAAGGAGTGGCCATTGGAGATGGATTGTGTGACCCTGAACTG
Seq C2 exon
ATGCTGGGAGGCTATGCAGATTTTCTCTATCAGACGGGTCTGGTGGATGAACTGCAGAGGCAGCATGTGAAGATGCAGACAGATGCAGGAGTCAAACTGATTCAGGAGCAGCGATGGGTGGAGGCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056480-'7-10,'7-8,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(5.4=100)
A:
PF0045017=Peptidase_S10=FE(9.9=100)
C2:
PF0045017=Peptidase_S10=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTGACTCAATTCTTCCA
R:
GGAAGGCCTCCACCCATCG
Band lengths:
197-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]