BtaEX6027762 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007146 | CPVL
Description
carboxypeptidase, vitellogenic-like [Source:HGNC Symbol;Acc:HGNC:14399]
Coordinates
chr4:67534914-67550421:+
Coord C1 exon
chr4:67534914-67534980
Coord A exon
chr4:67549603-67549725
Coord C2 exon
chr4:67550290-67550421
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTAATGTCTGCCCTTCTCAGTCT
3' ss Score
6.74
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
TGCATTAATTCAGTTTTTCGAGTTGTTCTCTGACTATAGAGACAATGACTTTTATGTCACTGGGGAG
Seq A exon
TCTTACGCTGGGAAGTACGTGCCAGCCATCGCCCACTACATCCACATACTCAACCCTGTGACGACCATGAAGATCAACCTGAAGGGAATTGCTCTCGGAGACGCGTATTTTGATCCCAAGTCG
Seq C2 exon
ATCATAGAGGGCTACCCATCATTCCTGTTCCAAATTGGCTTGTTGGATGAGCAGGAGAAAAAGTACTTCCAGAAGCAGTGCAATGACTGCGTGAAATTCATCCGCCAGGAGAAGTGGCTTCAAGCCTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007146-'7-8,'7-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(5.4=100)
A:
PF0045017=Peptidase_S10=FE(9.9=100)
C2:
PF0045017=Peptidase_S10=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCAGTTTTTCGAGTTGTTCTCTG
R:
GCTTGAAGCCACTTCTCCTGG
Band lengths:
186-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]