DreINT0051651 @ danRer10
Intron Retention
Gene
ENSDARG00000073716 | cpxm1a
Description
carboxypeptidase X (M14 family), member 1a [Source:ZFIN;Acc:ZDB-GENE-030131-5284]
Coordinates
chr13:9253506-9258527:-
Coord C1 exon
chr13:9258348-9258527
Coord A exon
chr13:9253801-9258347
Coord C2 exon
chr13:9253506-9253800
Length
4547 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
ATATTTCTACATGTGTTCAGGTT
3' ss Score
6.86
Exon sequences
Seq C1 exon
GGCTCAGAACTGTCTGGCTGGGCTCTTGGACGCTACAGTTTCGAGGGTATTGATATGAATCACAACTTTCCTGACCTCAACAACATCATGTGGGATGCTCAGGATCTGGCTACAGATAGAAAGAGAGTGAGCAACCACTACATTCCCATGCCAGAGTATTACACCTCCACTGATGCAATG
Seq A exon
GTATGTAAAACACTATGCTTGTTAAGTACACTGTTATGATGATGATGAGGATTACTCTCTTTATACAGTTTTCTCATTATTGTTCAAAAAGAGTCCTGCATTATTTGTCGAAAAAGATTTTTTTAAACAAACAAAGGAATCTTTCTTGCTTGGCCAAGAATATGACAAAGTTTGAGCACTTCCGGAGGTTTCTCTCTTTTTACCCTATAACTGTTTGCTTCATCTAGAGACATTTTGATTTAAGGTTTACATTCAGGGTGTATTTCATAAGTTGCTAGCCACTCAGCATTTTCACTGGACACTATTTTGTTGTTTTTATATTGCATTTTATATCATTAAATGCAAGGGCAAATTTCCATAAGCATATTAAATGTGTCATCTTTTATATCAAATCCTTACATTTAAAGGGGACCTCTTGTGCCCCTTTTTGCAAGATTTAAACTTGGGGCGTACTCGCACTATGCTATCTGAACCATGCCCAGGCCCGTTTCCCTGATCGTTTGAGTGCTCTGAATCGGGTCAGGCAACGTTCACTTGGCCGGCCCTGCCCGGTTGGAAGAGGTGTGCCAGACCGCAGTTCGTTTGTTCTTTGGCGCAGTGTGCTTGTATGTGAGTGCAAAACGTGCCAGATCCCGAAACTGAAAGCGAGACGTGAATTTTAAGGTACTGTTTCATATGGATTTATTAATCATTCTTACTGTTCAATTAACGCAAACTGTCATAGTTAATTAAAGACGCAAATCTCTCACTGCACGACAGCTGCACCTTTAGCAAACCTCCTAATTCCTGTAGCACGAGGACATTAGCCCCTTTCACACAGTGATACCGGTAAATATCTGGAAAATTTCCGGAACGACTTTACCGGTATATTCAAAAAAGTGCTGTTCACACAGGCGAGGACGTTACGGAAATTTTCCGGAAAAGAGCATTCACACATCCATTCCAAAATACCAGTAAATTCTGACATCATTCACCACAAATGAGCTTTAACGGCTGTGCTTGTATTTGTAAACATTTGCCTAAATTACAAACTCTGTGGATGATCAATATTGTGAACAACTTTCGCAGAATCACTTTCGCATGTCGAGATGTTCATAATATTTGCGTGTGCAGGCGCTCACAGGCACACGCAAAGCTTGAAGGTAAACAAACAACGGCTTATCATAAGCATCTCATCGATGATTATTTACACAGTTGGCATAAAGAAGAACATATAAACGTGATCTGACTAACTTCTAGCAGCTAAATGTGTCTGGAAAAATATTCAAAGGTTTTTATTCTCACAAACCGCGCGGACGTAAATGCGTCTGACTGTTGTAATTGGCTAAAGCAGACGTCTCACGTCAGCACGTTCTAGACGTGCACGCGCTTATTACGGTAATCTTCCTTTTGCGTTCACACAGCGCAGCATTCCGGCAAATTGCCGGTAATGTTACAACTTCTCTTTCCGGAAAATAGCCAGAACGAATTTACCGGTATTTTCAAAAAGGACCTGTTCACACATACAACCTTTCCGGAAAATTGCCGGCAATTTTCCGGAAAGGTCTGTATGTGTGAAAGGGGCTTTTGTGATTGTTTATAAGCGTCAAAAGTGGCTGATCTGTTCGGCAAAATATTTGACTGCGTGTCACTGCATATCAAACAACTTTAAACTATATAACTAAAGAAATCTCCACTGTGCTGAGCGAAAGCGATTCTCTACCGAACAGCGCATCATCGATGACGTAAGCGTGCTCAGGCTCGAATGTAATGTGAGTGTGGGCTATCAGGGGAGACAAGCGTGGGGGACAAGCGTGCTTTGGCCTGGTTCAAGGCAATTGTACATAGTATGAGTACGCCCTAAGTCTCTAATCTCCCTAGATTGTGTATGTGAAGTTTCAGCCCAAAATACCCCATAAATAATGTTTTTTTACTCTTTAAAGCTGCCACTTTTTGTGACTGTCGCTTTAAATTCAACTGAGATTGTGCTTCCAGCCCTATTTTGAAAAAGTGTCCTAGAAGATAACCAAAGTCTTTACACACATTGACCCAGAGACTGTTTAGATGCATGTCAATGATGAGAAGATGGTGGATGTTTACTGTGTGATGACTGAAATGGCCTTAAACACCCAGCAGGCAAAAGATGTCAACATGACGCCAGATTGATGTTGTACCCCAACGTCATGGGGACGTTGCATTTTGTTTGGAAATGAAATTTGGGTTGACGTCAGAACTCAACATCAGGCCAACATCAACATTCAACCTGAAATCAAGCAAATATCAACATCTAATGATGTTACAGCTTGACCTTGGATGAACGTTACCACTATGACGGCTCGACATTGGATTTTGGTCAGTTTCTAACACAACCTAAAATCACCCAAATATCAACTTCATTTTGACGTCGTTATTGGACATTAAAATAACGTTGTCTTTAGACGCTGGTTAGACATTGAATTTTGGTCACCTAAATCACAACCTAAATCTAACCTAATATTAACATCTTATGACGTTGTGTGCCTGCTGGGCAATCACTAAATGTACGTTTACACACATCCACAAATGACGTTAATGCATCAGCTTTTTACAGCGTAATACTCACTACTCGCTAGTCTTGAGTACTTTTGAAAGGTCTACTTTTTTCTTATACTTTGAGTAATATTCACAACAGACACTTTTACTCTGCCTACTTGACATTTTTAGGCAAGTAATGGTACTTTTACTCGAGTATGATTTTTCAGAACTCTTTCCACCACTGGTCATACTTTACTCACCCTCCCTTACAACTCTGTATGAGTTTTTTTTTTCTTCTGTTGAACACAGTAGGAGAAATTTGGAAAAATGTTGGTAACCAGACACTTGATGGATATTTGTGGTTACCCTCAGTCAGTTACCAACGTTCATCATAATATATGCTTAAAAACAACACAATATAGGTTTATAACAAATTGAGAGTGAGTAACTTTTTGGATTTTTGGAGACTCTAGGGTTGACGAGGACTCACTGTACACATGGGAATGAAGTTCAAGCAGATCTGTGAAGAATGTGAGCACTTCCTGTCAACTAAAGCTCCCTGTTCTGGGGCCTCTGATAGAAAAACAGTGGAGAAAGAGCAGTACACAGATTAGAAATGAAGTTTACTCTAGAAAGATGACAGAGGGAAACCCTATTATAAAGAAATGCAGCAAAAGAATGAACAATAACCATCTTTCTGTGGTTTACAAGATGATTATTGGAAAAGTTCTACTTTTTTCCACACATAGGAGGGGATGGACAATGGTGAGCAGACTAAAAAAATAGTCCCAGAACTAGTGGTGTACAAGACCCCATCAGTGGTGGGGGGGCCATCATAATACATTCTAAAAGGCTTGCACACACTACATAGAACATGTTTTGCTTTGAAAAATGCAAGATGTGGCAGTGGAATTTGGGGGAGAAACGTGTTTTGATTTGAGCTCATTTTTAGGACGCCATGTTATGCTCGAGAAGCTGCAAATGATGCCAGGGATGAGACAAAGTGTTGTGTAAGGGAGTGGAAAGGCATATTAAACTCTTATTGTGGCCTAATAATGTTTTAATACAGCAATCTTAAAAAATCAATTTTCATTTACATTTCACTAGCCATAAGTGAAGTTAATTCATAAACTAATTTCAAGAGGATCACTTGCTTATGATTTATCACGTCCGTTCTCCTATTAGCTAATCTTTCAATCATATGAGCCCTAAGCTACTATAAATAACCACAGTTTTCAGTTTTCAATATTTTAGGGTCAAAATGATTAGCTAAAGGGGTTAATAATTATTAGCGATTGTCTACAGAACAAACCATCATTATACAGTAACTTACCTAATTACCCTAACCTGCCTAGTTGACCTAATTAACCTAGTTAAGCCTTTAAATGTCACTTTAAGCTGCATAGAAGTATCTTGAAAAAGATCCAGTAAAATATTATTTACTGTCATCATGGCAAAGATAAAATAAATCCATTATTAGAAATGAGTTATTAAAACTATTATGTTTAGAAATATGTTGAAAAAAATCTGCTCTCCGTTAAACAGAAATTGGGGGGGGGGAAATAAACGGGGGGGCTAATAATTTAGGGGGCTAACAATTCTGACCTCAAAAGTACATGTGTGCATGTGTTATCTTGATTAATGTTTTGTGACCAACATATCAGCATATTGAAGTGTGTTTTAGAGGAACATGTAAAACCGAGAACTGTAGTAATGATTAAATTCAGTTTTTTCATGAAAAGAAATGTATTATGTTTGTGAAATAAGGTTATTTTAAAATATACAAAATAATATTTGAAACTATTATTGTGTTTACTGTATTTTTTACCAAATAAATGCAGCCTTACTAAGCGTAATAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAAAACCAGGAATTAATTCAAACTTTTGACTAGTGATGTATATGGTATTATTATATTTATGTTATATTTCTACATGTGTTCAG
Seq C2 exon
GTTGCCCCAGAGACACGCGCTGTAATCAGCTGGATGCAGGATATCCCGTTTGTACTGAGTGCCAATCTGCATGGTGGAGAGCTGGTGGTTACTTATCCTTTCGATGGTACACGTGATTGGATCCCCCGTGAGGACACGCCCACAGCAGACAACGATTTTTTCCGCTGGTTGGCTACAGTCTATGCCACCACCAACCTGGTGTTGGCAAACCCAGAGCGCAGGATGTGCCACTCTGAAGACTTCCAGCAGCACAACAACATCATCAACGGGGCTAACTGGCACACTGTTCCAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073716:ENSDART00000058066:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(19.2=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(31.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]