MmuINT0041922 @ mm9
Intron Retention
Gene
ENSMUSG00000027408 | Cpxm1
Description
carboxypeptidase X 1 (M14 family) [Source:MGI Symbol;Acc:MGI:1934569]
Coordinates
chr2:130219120-130219681:-
Coord C1 exon
chr2:130219502-130219681
Coord A exon
chr2:130219418-130219501
Coord C2 exon
chr2:130219120-130219417
Length
84 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
CCTCTCTTCCCCTCGTTTAGGTG
3' ss Score
10.69
Exon sequences
Seq C1 exon
GGCTCAGAGCTGGTGGGCTGGGCAGAGGGCCGCTGGACCCACCAGGGCATTGACCTTAACCACAATTTTGCTGACCTCAACACACAACTGTGGTATGCAGAGGATGATGGACTGGTACCCGACACTGTCCCCAACCATCACCTGCCACTGCCTACCTACTATACATTGCCCAATGCCACC
Seq A exon
GTGAGTATACTGGGTCACTGGTAGAAGGCCACCTAAGGCCCCCTTGTCTCTGTGTGCAGATCATCCTCTCTTCCCCTCGTTTAG
Seq C2 exon
GTGGCTCCTGAAACGTGGGCAGTGATCAAATGGATGAAGCGCATCCCGTTTGTGCTGAGTGCCAACCTCCATGGGGGCGAGCTTGTGGTGTCCTATCCTTTCGACATGACTCGGACTCCGTGGGCTGCTCGTGAACTCACTCCCACACCAGATGATGCTGTCTTCCGCTGGCTCAGCACTGTCTATGCTGGCACGAATAGGGCCATGCAGGATACCGACCGCCGACCTTGTCATAGCCAGGACTTCTCCTTGCATGGCAACGTCATCAATGGAGCCGACTGGCACACAGTTCCTGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027408-Cpxm1:NM_019696:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.090
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(19.1=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(32.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGATGGACTGGTACCCGA
R:
GATAGGACACCACAAGCTCGC
Band lengths:
176-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: