HsaINT0041075 @ hg38
Intron Retention
Gene
ENSG00000088882 | CPXM1
Description
carboxypeptidase X, M14 family member 1 [Source:HGNC Symbol;Acc:HGNC:15771]
Coordinates
chr20:2795599-2796161:-
Coord C1 exon
chr20:2795982-2796161
Coord A exon
chr20:2795897-2795981
Coord C2 exon
chr20:2795599-2795896
Length
85 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
TCCTGACCTGCCCCATCCAGGTG
3' ss Score
8.1
Exon sequences
Seq C1 exon
GGTTCAGAGCTGGTGGGCTGGGCCGAGGGCCGCTGGAACAACCAGAGCATCGATCTTAACCATAATTTTGCTGACCTCAACACACCACTGTGGGAAGCACAGGACGATGGGAAGGTGCCCCACATCGTCCCCAACCATCACCTGCCATTGCCCACTTACTACACCCTGCCCAATGCCACC
Seq A exon
GTGAGTATTTTGAGGGCGGCAGTGGAGGTCTGTGGGGGGCGGACCTTGTCTCTGTCTCCTGCCCCTCCTGACCTGCCCCATCCAG
Seq C2 exon
GTGGCTCCTGAAACGCGGGCAGTAATCAAGTGGATGAAGCGGATCCCCTTTGTGCTAAGTGCCAACCTCCACGGGGGTGAGCTCGTGGTGTCCTACCCATTCGACATGACTCGCACCCCGTGGGCTGCCCGCGAGCTCACGCCCACACCAGATGATGCTGTGTTTCGCTGGCTCAGCACTGTCTATGCTGGCAGTAATCTGGCCATGCAGGACACCAGCCGCCGACCCTGCCACAGCCAGGACTTCTCCGTGCACGGCAACATCATCAACGGGGCTGACTGGCACACGGTCCCCGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000088882:ENST00000380605:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(19.1=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(32.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGACCTCAACACACCAC
R:
CACAAAGGGGATCCGCTTCAT
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development