RnoINT0041711 @ rn6
Intron Retention
Gene
ENSRNOG00000021220 | Cpxm1
Description
carboxypeptidase X (M14 family), member 1 [Source:RGD Symbol;Acc:1306937]
Coordinates
chr3:122916512-122917071:-
Coord C1 exon
chr3:122916892-122917071
Coord A exon
chr3:122916810-122916891
Coord C2 exon
chr3:122916512-122916809
Length
82 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
CCTCCCTTCCCCTTGTCCAGGTG
3' ss Score
10.98
Exon sequences
Seq C1 exon
GGCTCAGAGCTGGTGGGCTGGGCAGAGGGCCGCTGGACGCACCAGGGCATTGACCTTAACCACAATTTTGCTGACCTCAACACACAACTGTGGTATGCAGAAGATGATGGACTGGTACCCCATACTGTCCCCAACCATCACCTGCCACTGCCTACCTACTATACATTGCCCAATGCCACT
Seq A exon
GTGAGTATTCTGGGGCAGCGGTAGAAGGCCACCTAAGGCCCCCTTGTCTCTGTGTAGACCATCCTCCCTTCCCCTTGTCCAG
Seq C2 exon
GTGGCTCCTGAAACATGGGCAGTGATCAAATGGATGAAGCGCATTCCATTCGTGCTGAGTGCCAACCTCCACGGGGGTGAGCTTGTGGTGTCCTATCCTTTCGACATGACTCGGACCCCGTGGGCTGCTCGTGAACTCACTCCCACACCGGATGATGCCGTCTTCCGCTGGCTCAGCACTGTCTATGCTGGCACAAATAGAGCCATGCAGGACACCGATCGCCGACCTTGTCATAGCCAGGACTTCTCCTTGCATGGCAATGTCATCAATGGAGCCGACTGGCACACGGTTCCGGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021220:ENSRNOT00000028818:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.090
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(19.1=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(32.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCCATACTGTCCCCAACC
R:
GGTCCGAGTCATGTCGAAAGG
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]