DreINT0052430 @ danRer10
Intron Retention
Gene
ENSDARG00000016074 | cryz
Description
crystallin, zeta (quinone reductase) [Source:ZFIN;Acc:ZDB-GENE-050306-24]
Coordinates
chr2:11335387-11335800:-
Coord C1 exon
chr2:11335690-11335800
Coord A exon
chr2:11335503-11335689
Coord C2 exon
chr2:11335387-11335502
Length
187 bp
Sequences
Splice sites
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
3' ss Seq
GCTGTTCATTTGTTATGCAGAGA
3' ss Score
5.67
Exon sequences
Seq C1 exon
CCGCATGCTTTTGTTTTGAGTACACAGTCGAGTACGGTGGCCGAAAACAGACAAAACTCTTTCATACGGAAGTCAGAAGCTCCAGCCAGTCAGCTGATACCTGCGTGATAG
Seq A exon
GTTAGTATTAGCTTATATTTTGCTCTTTTCTTTTACTTATTGTTCTTTCTTTTCCACGATATGAGTAATGTTATAAACTATAACTTTAAATAAATGTTATGAAATTTAATAGGTCTATGTTTGCTATTGTTTTCCACTGTGCAGGAATCAAAGTTCAGTTTGCTTTGGCTGTTCATTTGTTATGCAG
Seq C2 exon
AGACCACCATGGCCGCATCTAGATTAATGAGGGCTGTCAGAGTGTCCGAGTTTGGAGGCCCTTCAGTTTTAAAACTCTGCTCAGACCTGCCTGTACCAAGTCCTGGTCAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016074:ENSDART00000131836:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF082407=ADH_N=PU(3.0=5.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCATGCTTTTGTTTTGAGT
R:
ACTTGGTACAGGCAGGTCTGA
Band lengths:
212-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]