MmuINT1007685 @ mm10
Intron Retention
Gene
ENSMUSG00000028199 | Cryz
Description
crystallin, zeta [Source:MGI Symbol;Acc:MGI:88527]
Coordinates
chr3:154596711-154605015:+
Coord C1 exon
chr3:154596711-154597284
Coord A exon
chr3:154597285-154604891
Coord C2 exon
chr3:154604892-154605015
Length
7607 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
AATATGTTAATTTCTCTTAGCCT
3' ss Score
3.94
Exon sequences
Seq C1 exon
GAGCGTGACCGAAGGGACTTGGAGACTCGAGCTCCTCCAGCGCTCTGTAAATCCAATCCCCAGCCTTCGCCACTTAAGCTAGCTCCACCATCACCCGGAGGACGCATTAGCATTGCACAGCCTCCCCCGGCCCGGGCCTCACCCCGTCCAGAAGGAGGATGCGCCCTGCGCAGGAGCTGGTGGTGAAAAACTCTTCCCGCGAGTTCAGGAGCTCCACCACCTCCACCGCGTCCTCGTCCACACTGCCCTTGCGGCTAAGGTCCGCCTTGCTCAGACTCTGCGCCTTCCACCGGCCGAACTCCGCGCTACGGTCCATGAGCGAGCGAGCGAGCTGGGGTCGGCTTTCTGCTCTGGAATGCGCCTTCTTCTCCATGGGCGCAGCCATATTGCCGCCACGGTGGCCGGAGAGGACCAAAGTTCCCCATTGGCGCAACCAGGAGCAAGACGTGCGCCGCCAGACCGTACAGGCGTAAACCGAGAGGGGGAGCCTAGCGAAGTTAGGGAAAGCCAGCCCACCTCTTTCCCCACAGACCTTCTGGAGCTTAGGAGGTTTTGTTTCCTACTCTAGAGGAGG
Seq A exon
GTAAGTCACCCAGGACCGCAAGCAAGGTCCTACTCTTGTCTGCCGGGAGGCTTTTTTTTTTTTTTTTTTCTTTCTTTCAAGTTCTAGGCTCCAGGAGATCTATCTGCACTGGAGAACTGCACAGCAGGCGGCCGGTGGTTCCGACTGGGGTAGCTGCCTACTGATGCCTGGGGATTTCTGCCGCCACCCAGGCACTCGCGCCCCAACTCCGGGTTCACAACTTCCCAGGTGCAGGTAGAGGAGGTCTGTGTTCTGTCCTCCGGTGTGTATGCAGTGGGCGTTGTTATTCCTATTTTTAGACATAGTGGCACCCACCTACAGTAGTCTTCAAAAGAAAGAAGAGAGACCTAGAGAGAGTCAGAGACAGAGGGACACAGAGAGGGACAGAGTTAGAAAAACCTAATACATTGTTAACTACATCTTGCGCATTTACAGTTCCCAGAGTTCCTGCCTCAGTCTTGTGACCAGAAAAGACCTGTTAATGATTGAAAGTGCAGAGGCCACTGTGTGGACTTCGTGTCCACCTCGAGCCCCTGAAGCCACCATAACTCCCCGCTGGCTCCTGCCCTAGGAAATGCAGCTTGTAGCAAGCAGCATTCTGTCACACTGAAGCGGGGCCTGCCCTGTCCATGAGATGCTGCAGGGGTACAGAGTGATCAGTGTGAAAGCAAGACCGTGACAACATCATATAGCCAGAAGACTTGGACTGGATACTTTAATTTTCATCATTTATTCGTGTTTCCAAGTTAATAGTAAGCCACAAGCTTCCATGAGCCATTCTGGAACAGTGGCAGTACATTTTATAACTATGAGGCCTCTTTTTTAGTCTTCATTTAAAACTCTCTCTAGAAATCAATTTTATTTTATTTTGCTCTTTTTTCCACACCGTGTGTATTCCTGGTGCACTCAAAGGACAGAAGAGGGTATTAGATCTCCTGGGACTGGAGTTAGAATAGGTTTCGAGCCTGAGTCACCAAGTTGGTGCTGGAAAGCCAAATGAAGCCCTCAGCAAGAGGATAACAAGTGTTCCTTGCCGCTAGCCCTAACCTTGGCCCTCTGCACTTCATTAGTAATATGTCTTTCCTCTTGAGTTTGAGAGTTGACTCACTAACTCTATGTTAAGATATACATACGTCTAACATATCCCCTACCCATTTAACTTTCATTTAAACCAATGAATGAGTTTCAATCAGTCTAGAGGAGGAATTTTTAACTGTGTATGTCCTAGAAATAAAAAGTAAAATAAAAATAAAACAAGGTACTATAAACAGTTTTCACAACATATATATGATAGATAGAAAAGCCCATTTAAACCATAGCATAGTTAACAAACCAAAGAAACTAGGCATGATGGTGCATATACTAGGAAAGCTGAGGCAGGGGAGTTATCCAGAGCTCCAGACCAACCTGGACTACAGTGTGAGATGCTCCAAAGTGGCAGAAAGCTCCTCCTTGTCCAGTGTGAGACCATGAGTAACAATAAAGCTTACATTGTTGCAGCCAATCCCCACAGGTAGCCTAGACTAGACAACCTATACCATCAGGGTAGATTAGCTTTCCCTGTAGAACCATGTCTTTTATGTTTCTACTGTATTTCCCAATTTGTAGGCATTTGAAGAATACCCAAGTAGACGCCTTTATTAGATAATATATGCCCCAGCCTATAGCTTGGTGACATTTCATACCCAATTGCTCATACATTCCAGAATTCATTTCAGAGGCATGAAGGACAATCGATGCCAACATTTCCAAAAGTGAAGTTGGAAGATTCTAAGTTAAGGAAATAAAATCAGCCAACATTTAAGGCACTGAACTTGGGTTCTAGCCCTGCTGTGACCTCTGTGACCTGCCAGGGTTTCTGAACCTCTTCTAACAAAGGCAAAGGTCGTCTCCTTCATAAAAGGAAGGCTGGCTTTTTAGTTCTGCATAGCATCTTTTCCCTTTGGTCTTTTGTAAAGATAATAAAATGAATGGAGATTTAAAAACTATGCTTTTTTAGGAAAAGCTCACTATTATGAAGGCTTAAGTTCATAACTGCTGTTAGTATATCATCCTATTTTATTCTTGTGGTTCTTGTCAGGAGCCATCGAGGAAAGGGGACCTTCCTGGAGGCTTATGATGGCTGAGCTCTGAGAGGCAAGCTCTCAAGAGGCTTCATCTCTGGGTTGCTTCCTGCAGCTGATATGCCTTTCCTGTCATAGATAATCTAAGGGTTCCAGAGCATCACCCACTCTATTGAGCAGATTTCGTATAGATCAACCTAAAGATGAACTTTCATGAATTAATGCTGTTTAGATGAATTAATGATTTCATAGAATTCCTGATTTGATTCAAATCCTTTTGGGAAGAAAGCTTTAAGATGGTTTTAGTTGTTTTGCTAGAAAGATGTAATAAAGTTAGAATCAGGAATAGACAGTGCCCGTGCCTCAGAATAGTAAGTAAAGGCTGCATAATAAAAGATACAACAAGCTTTCAAAATTACACTAAAAGGAGAAAATAGGCTTGGGACAAATTTGTGTTCAAGGAAAAATATTCAGGTCCAAGGATGAAGCCACAGGTGTGCACTATGATCAGGCCAGGGCATGTAAAAACTGAACTTATAGTGAGCTTATCGTATAAAACACTGCATTGCACTTGTTACTGATACCTTTCCGTAACTCCCTTTTATGTAACATTTTATCTATAAGGGAATTCTTTCTTAGAGAACTTTTTGTCTAAAAGTATAAAAAGTCTGACAGCAATAAAGGAAGGTGGTGCAGCACACACATTTTCCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTTGTTGTTGTTGTTTGTGTGAGGGACTTCTCTCTGGTTCAAAAACAGTTAAGGAGCTCTGAGCCTCTTACCTGGCCAGCCAGGGGCTCCCCACTCACTCTCCAGAGAGAGGAGCACTAACAATAAATCCTTTCACTTAATTCCCTCTGCTGAAGAGCATGAGTTAGTCCACCAGGAACTGAGTTAGAGAGCTCAGTGCTGGTTCTCAGTGCTGGTTAAAGCACGGCATTAAAAAAAGATTTATTTTTTTTTCATAGCAACATTTTTTTTCCTTTTTTTCCCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCCATACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCCAACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGCTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGTTCCTTGGGTGCTTTCTCTAGTTCCTCCATTGGGGGCCCTGTGGTCCATTCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGAGAGCTATAACTGGGTCCTTTCAGCGAAATCTTGCTAGTGTGTGCAATGGTGTCAGCGTTTGGAAGCTGATCATGGGAAGGATCTCCAAATATGGCAATCACTAGATGGTCCATCCTTTTGTCACAGCTCCAAATTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCATTTCTAAGAAGGGGCAAAGTGTCCACACTTTGGTCTTCGTTCTCTTGAGTTTCATGTGTTTAGCAAATTGTATCTTATATCTTGGGCATTCTAAATTTCTGGGCTAATATCCACTTATCAGTGAGTACATATTGTGCGAGTTCCTTTGTGATTGGGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCATTCTCTTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAACAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCGGTTTGGGACATCTTCTGGATATTTTTTAAAGCATTCATTTAAGTACAGAGCAGTAACAAAGAGTTAGGTTTCCTAGCACTTACTCAAGCACAAAACATTTTCACAGCGCTTACTTAAGCACAGAGAGCTAAAGAGAAAAAGGAGCCTGCTGGGGGCCAGCTCTAGCTGTGCTTTCTGGTTCTCTCTTGAAGGTAACTGAGGGGGAAGGGTGTCGTTGGGGGCAAGACTTAGTCTTGCAAGATATTTAGGGTTGCCTTTATTATAATAAAAAGTTTATCTGTCTTAAGTCTAAGTCACATTCCTATGGTAGCTGACCTGCCTTTCTGAGTTGTTCTGAGGCCAGAAAACTTCAAGTCTCTGGCCTTTAGCACCTCATAGTAGAACAGCAGGGGGTTAAGTAAAGAGCCTTTGCTCTGTCTCTGCATTGACTGCTGCTCTAACTCCCAGCCTGCTCGTTGAAGTCACCTGAAGAAAAGGGGACACTTTGAAAAGTGATTTTTCGGTTGTATTTCTAAATTCTCTCTTAAAACTTCTTCTCTTGCTCTCTAAAACCTTTCCCAAAAAAGTTTTCTCTGAAAAAGTTCTTTTCCTAATCTTGCTCTCTCCTTCTGCTCTGATATAACGATGGCCTTGCTTTTGATACAATGTAACCTTCCTTAGTCTTTTGTACCTTTTCTAGGAGAATAGATCACATGGTTTATCCAAGCATTCTTGTTTTTTCAAAAAAGTTCCCTAGAAGTTCAAACATAAATTCAAATCATAAATTGAACAAGAAGTATACAATAGAGAATGTTTGCATGCATATCCATTAAGAGTAATTATTTGGCTGAACATTCATTATCTATCCTAGCTCTACAGGTTTATGGAGAGTTAAAGATGCAACTAAGTTATTGAAGTTTTGTATAGAAAAACCCAGTCAACATGTTATCTTATGTCCTTGCAAATATAATAAATCTTTGGTTCTCTTTTATGACCTTTGATTAATTGTTTTACAACTCTTGGAATGTGCTCTAAGTTGTAAATGCCTGCTTTCTATCTCAGAGGCAATTAAATTGAAGACTGGCAGAGTTCTCCTTGCAGTGTGATATCAAAAGGACTTAATGACAGTCCTATTATAAAAGATCTTAATAATTACTAGTGTAATTTTAGGAATTCTTATAGAATCATCATTAAGAACTAAGACATCATCTACTTGTCTATATAGCATCACTATAAGACAGTACATCATCCTTGATCTGCAGAAACCTGCTCAAAGGATAGGCTAGTGATTGTTATATATGTTTAATGATAACAGGAAAAGCATACTAATAGCAGGAATCTTTCCTCAGATGTAATCTTGGCCTTGCCTAAAGGAGTGAATCTGTCATAGCTTTATAGTCTATGATAGAACTATCTCAGAAAGATCGCCTGCTAGTTTTTGGCTTCTTTTAGATGGCTCCTGGCAGAAACCAGTGGTTTTCAGCCACAGAATAAGCAAGAGAGTGTGAATTTTCCAGAAGCCATCAGCTTCTACCCTCAGTACAGTTAAAGAGAGTTACAAGGCCAGAGAGCATCAGTCTTTTGGCCTTCATTCAACTCCGTGTTCCACCTCAGCTCTGAACCCCAGAATGCTGGGGCTAGCCCCCTGCAGATTCCCTTTGATACAGTGAGAGTGTTATGAAGCAGATGATGAGACTGTGATTGAGTTCAGAGGTAATAAGTGTAGGCTGGAGCCATCGGAACGCAAAGGCTCAGTGGGGAATGAGATTAAGAGAAGCAAAGGGTGGCTGGTGCTGCCAGGACCAGGCTGCCTCTCTGCAGAATCAGGATAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGTTCATAGCAGCCTTACATTTAGTACAGTGAGTTACTATTGAAAAGTGCTATTGTCTGAGCTGTGGCCTGCAGCAGAAAGCCATGAAGACTTACTCACAGTAGACCCTCAGACCCTTGAGGTCATGATTGTTGACTGTTGATGTTCCCTCACAGAAGGATGGGGGTCCTTGCACCTGCACTTGGCCTCTTAGGTCCAGAAGGTGCTAGGTTATTTAGAAGGTAGAGGGTTACCTGGAGAGGGTTTCCATCTATCTGGCCATGGGGAAGTCCTTGTCCATGCTGGGTGAGACTTTCCAGTGGTGTGGTTGGTTTGGAGTCATCTTCACCCCTGTAAGTAACCCCTCACCCATGTTCTGTAAGCCTTACAACCCTGCCTGAGCCAGACACTGGGGAGTTGTATTTTGTTTTGTTGCTGAGAGCACATAAGGATGTGGGGGCATTAGTGTTTTGTCTGACTTGTTTTCTGGACTGGATAGAAAACTGTCTTTTCTCAGGTTTTGAGTTTTGTGTCTCAAACACCTCCTAGGTAGCAGCAGAATCTCACTATTTGATTTGATTTATTTAAAGAAATTATGATAGGCCATAGTTAACATTATGGACATACAGATAAAACCAGTTCATCACATCTACCAGTATGATGTTTCCAGTTACATAAATTCATCTGCTAATTAGCTTTGCTTTTCTTAGCATTTATTTTTAACTACCTTTTATCTTCCTTATAATAGGATGACAGAAAAGTTTGCTGGGCCATTGTTATATATAAACCAGTGCACTAATTTTTAACTTTGAGTTTTCTTTCTCCTTTTGATACAAGGAACTATGGAGGGGCTGTGAGACAGTTCAGCAGTTAAAAGCACTTGCCACCAAACCTAGCCACCTCCGTTTGGTCCCTGGAACCCACATAACTCCTGGTTGTTCTCTGCCTCCACACCTGTGCCTTGGCTTGTGTCCATACCTCCTTTCACACATGCATGCACATATAAACAAATGTGATTTAAAAACACTGCAGGAAGTCTGTTTTTATAACCTGATAAATTTAAAACACTTAGTGCTAAGAGGAAAAAGGAAATACCACAATTCAGTACAATTCAATCTAAATAAAGTTAGCAAATATGCAAAAATAATTGCACACATTGCTCTTAAATGCATATAAACACACTCACCAATTACTAGCATTGGATTTATGGTGCTAATCGATTCTTGAAAGTGATGCCCAGAGGTAGTCTGGAGGATGAGTGCAATAGGCTTCAATTATATCTATAGTGCTTTAGGTTATTAAAAGATTAATGTGTTAAAGCTAGGCATAAATGTGTTTATTCCTTGTTTCTCTGTTATGTTTGTAACACTTCATAATCTGACTAAAGATCCCTAAATCTAATATTAGTTCATAACATTTCTAAGGCACTGCAACCCAAGCTTATACAAAAGGAAACATCAGATGTGGTGTCCTGTGTTGGTCCAGATGTTTTTATTTGCATGTTTGCCTCCCTTGTTGAAGGCAGTGAATCTTCGCAGGAAGTCCTATGGAGTAGTTTGCTTTGTAGCTGACGGGTTTTTGAGATGAAAGGTCCTCAGGAATGAAGGGAGATCAGTGGGAAGCTCCTGGCTTAAATTGTTGTTTGAAAAATTATTTGATCTGCTTCCTCTTGGGGGGAGAGAAAGAACAGTGATAGCCTAGATACAATATGATAATATGTTAATTTCTCTTAG
Seq C2 exon
CCTCTAGGTCGCCATGGCAACTGGGCAGAAGTTGATGAGGGCTATTCGAGTGTTTGAGTTTGGTGGACCAGAAGTGCTGAAGCTCCAGTCGGATGTGGTCGTGCCTGTTCCACAGAGCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028199:ENSMUST00000029850:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF082407=ADH_N=PU(2.1=5.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types