GgaINT0035726 @ galGal4
Intron Retention
Gene
ENSGALG00000011361 | CRYZ
Description
quinone oxidoreductase [Source:RefSeq peptide;Acc:NP_001073231]
Coordinates
chr8:28538442-28538950:-
Coord C1 exon
chr8:28538676-28538950
Coord A exon
chr8:28538560-28538675
Coord C2 exon
chr8:28538442-28538559
Length
116 bp
Sequences
Splice sites
5' ss Seq
GGGGTGCGG
5' ss Score
2.84
3' ss Seq
CTATTTTCGTTTATCTCCAGGAT
3' ss Score
9.99
Exon sequences
Seq C1 exon
GCTGATCCCCGCCGCGGGTCGCGGGGTCGGCCGGGACGGTCTTCTGCTGCTGTTCTGAGTGCTGCTTTAACAGTGAGCGGAGAGCGGGGCAGTGCGTGACCACGTTCAGAGTCCGCTTGGCAGCGGCGTGGCCGAACGCCGGCGGTGGTTGTCCCGGAGCGCCTCCGCCTGCACCGCGACCTCGGCAGCCGCTGCCGGAGCGCCACGCGTTGCGTGCTGGCCGCACAGCGCTCGGGAGGACCTCCGCGGTCAGGGGAATTTTGTGCCGTCTTGGG
Seq A exon
GTGCGGTTTGTTCTGAGTCCAGTCAGCTGCTTGAGAAGAGGTGGTTTCGTGTCTTTCTTCCAAAGGTGTACGATAAGGCGTGCAGTCGGCACACCGCTATTTTCGTTTATCTCCAG
Seq C2 exon
GATGGCCGCGGCAGCCGCAAGGGGTGCGATGAGGGCGGTCCGGGTGTTTGAGTTCGGGGGCCCCGAGGTGCTGAGGCTGCAGGCAGATGTCCCCATCCCCTCTCCGGAGGACGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011361:ENSGALT00000018533:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.026
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF082407=ADH_N=PU(2.1=5.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCACGTTCAGAGTCCG
R:
GGCCCCCGAACTCAAACAC
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]