HsaINT0041861 @ hg19
Intron Retention
Gene
ENSG00000116791 | CRYZ
Description
crystallin, zeta (quinone reductase) [Source:HGNC Symbol;Acc:2419]
Coordinates
chr1:75190395-75199092:-
Coord C1 exon
chr1:75198640-75199092
Coord A exon
chr1:75190519-75198639
Coord C2 exon
chr1:75190395-75190518
Length
8121 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TAATTTTTTTTCTTCCTTAGTAT
3' ss Score
8
Exon sequences
Seq C1 exon
AGTAGGATGCGGCCAGCGCAGGAGCTGGTGGTGAAAAACTGATCTCGCATGTTCAGAAACTGCACAAGCTCTACCACATCCTCGTCAACACTGCCCTTCCGGCTGAGGTCCGCTTTGCTCAAACATTGCGCCTTCCATTTCCTGAACTCCGCGCTGCGATCCATGGGTGACGGACTCAGGGTCTGCGCTCGGCTCCTTCATGGTAGCCTCGTCTCTCCCTGGGGGCAGCCATATTGAAGCGAGCGGTGGCCGAAAAGGTCCAAACTTCCTCTTCGTTCTTAATTTGGGAAATTCTAGTGCCTTCGCCTAGGGGTGGAGAGAGGCGCACATCCTGGGTGGAGCGAGGCGCACATCCTGGGTGGAGCCTGCAAAAGTTGGAGAAGGTGTGGCAGTCCTCATTTCTGTGGAATCTGAAGAAGCCCACGCAGATTTTAATTCCCACTCTAGATTCTG
Seq A exon
GTAAGTGGTTTTAAAAACTCTCCTTAGTTGTTTAGACAGCGAATCTCCCCACTGCTCGTCCAAGTGGAACCGAGTTTGATTTTGGCTGCACCCCTTTCCTGCCCTCTGTCCTCCCAGAGAACTAGTGCGTAGAGCTCCAGACCGAAGCCATTCCCCTCCAGGGGCTGCAAGTTCCCATCCATAAATCAGGTAGGAAGTTTTGCCTTCTGGTCCTGGGCTCCTAGCCCTGGTCCTGCGTTTAGGCTCTGAGTTTAGGCTACCACACCATGAGGTGTCCGTTGGCACTACCCCTGCCCAGCCTCCGCCCCCCGCACTCCCTGTCCCCCAGCCCCACGCTGCACCCCCCCCCCCCCCCCCCGCCAGTCACCCGCTTGATTTTTCCCTGCAGCCAGTGCCTGGGTTTGGGGATTCCTGCAGCAGCGCCCAGCGGTCTGTCCAGGGCCCCTTCCCACAGCCCAGCTCTCAGCTGTAGAGGATTTGTCCTAGGTAGGGCCCCTTCCCACAGCCCAGCTGTAGGGGATTTCTTCTCCTAGGTAGGGCCCCTTCGCACAGCCCAGCTGTAGGGATTTGATTTCTTCTCCTAGGTAGGGCCCCTTCCCACAGCCCACCTGTCAGCTGTAGGGGATTTCTCCTAGGTAGGGCTCCTTCCCACAGCCCAGCTGTGGGGGATTTCTTCTCCTAGGTAGTGCCCCTTCGCACAGCCCAGCTGTAGGGGATTTGATTTCTTCTCCTAGGTAGGGCCCCTTCCCACAGCCCACCTGTCAGCTGTAGGGGATTTCTCCTAGGTAGGGCTCCTTCCCACAGCCCAGCTGTAGGGGATTTCTTCTCCTAGGTAGTGCCCCTTCGCACAGCCCAGCTGTAGGGGATTTGATTTCTTCTCCTAGGTAGGGCCCCTTCCCACAGCCCAGCTGTGGGGGATTTTTTGTCTTGGATTCCCACAATTACAGGTTTCCCGGAGCTTCCTCCAGCTTTGCCATCAGGATTGCAGTCTTTGAGAGAAATGTATAGTTTTATTGACCCTGTGACGCCCACCACCTAGAATAATCTTCAAAAGAAAATTACAAAACACCCTGTTAACACATCGTTGGATGTTTATACTGAGTTTCTAGAGGAGACTCAGTGACCAGGGAAGGTGTGTCAATGATTAAACCTAAAGGCTAAAGTTTGGAATGCTTGTCCGTAGCTAATGGAAATTGTTGTGCGAGTCCCTCTGAAGCCACTGTGATTACGTGTCTGGTTAGCGCAGCGAGTTCAGCAGCAAATCTCTCCAAGCTCTACTCCTCCAGCATTAGGGAACAGACTGCCCTGTTCCATACGATCATGGAACCTGGAGGAGTCCGAAATTATTAAACTCCTCCCCTCTTCTTACCCCGTCCTATCTCAAGTGAACAGAAGTGACCTGATAAGATCACACAGCCAGGAAGAGACTTTCTCTGACCACTTGTAATTCTTGCCTTTTTTACATTTCTGGGTTAATAATAAACCATATGCTTACATGAGTCATTGTGTATTAGCAGCAGAACAATTTGTAATGATTGATTTTTTTTCTAAGTTTTCAGTTTTTAAAATTCTTGCCAGAATTCTTATTTAATTTTACTTTTGCTCTTGTCTCATAATGTTCCTTTGCTCTGGCTTTGTGACTTGATCTGTTCATCCTATGTTAAAATATACTCCTAACATTTTCCCAATTCCTTTAATTTTCGTTTAAATCAAATGGATACAAGCATAGCCAGGAAAAAGATCACTGTTGGAAGAGGGATTTTAGATTTTCTATTTCCTAGATTTGTAAGGCATATTGGCAACCTTTCAGAGGTAAAATTAAACCAAAAATTAAACCAAGGGACTCTTAATTTTTAAAAGTTTATATTTGATAAACAGGAAGGCCTATTTGAAGTATAGTTTAATTAAAAAGCACAAGCAATGGAAAGGCCTGTCCTGTTCACAAGGATCCGATGCTAGGGAGTAATTTTTTTTTATACATTTTTAAAAATAGAATCATGTCCTTTGTATTTCTGCTGCATTCCCTGACTTAGTGGGCATTTGAGAAATTTCAAACTCTAAGCAGATGCCTTAGTCATAAAATATGCGATTCTACCTGCAGGTTAGTTTGATTTCACATTTTCTAGCTCAATCTGTCTCACTATCACTATTGTAAAGTTTATTTCTACGAAGTAAAGGGTCTTATATGCCAGCATCTCAAAGGGTGAGATGAAAAGGATGGTAAAGAAAAAAATCAGCTAACACCATTTAATTACAGGACTTGGGTTCTAGCTTTGCTTCTGTGTGACCCTGACCAAGTCTCTTAACCTCTTGTGATGTTTTCTCATCCATAAAATGGATGGCGATTTTATTTTTACTTCTGCATAAAATAATAGTTTAAATAACTTCTCTACCTGTTCTGAAAACAGTTAAGTCAATGGAGGTGGAAGACTTATGCTTTTTAGAAGAAATCCGGTATTACAGGATTTTAAGTATTATCCTATTTGCCATCAGTATGCCACGTTATTTTATTCTTTGTGTAATCTCCTTTGACAGGCTTCATCGTTATGAAGCATATGATGATCCCGTGGATAGGTGAGTTCAAAGGCAATGAGTGCAGGTTGGAGCCTGATGAATCAGAATGCTAAAGGCTCAGTGGGAGATAAGATCAACAGAAGCAAAGTAGGAGATAGTGTGGTCAGGCCATGCCCCATCACTTTCAAGCCTGATAGGATAATGTAGTCAGATAGTACTGGGCAAAGCAGATGAGTCTTCCAAATCCAGTAGGATGAGTCATCTTCCTTTATTCCTTTCTCCCAACTTAGCCAATGCCAAAATGTGGGGGGGGAAAGATACAGATCCTATTTCAGAGTAATTTTACTTTTATTATTACAACAGTTTTTTTATGGTAATCATGAGATGTGAGTGAAAGAAATATGTAGGAAGTAGGTAGATATCGAAAATGGAAAAAGCAAGCATCTCATAGGCTATGTGTGTAGGTGTGAGAGAGAGAGAGAGAGCACCCAGCTTACAGAAGCTAGGGGCAGGGTGGGGCATTTTCTTCTTGCTCTTTGTGTTCTCTGAGTTTAACACACCACTTCATGTACAGTTAAGGTTCAGAAAAATACGCATTGCATAACAACCAATATTTAGTATTAATGTTTTGTTTAAGTCATCTTCTAGACCGAATTCTTTGAGAATAAGAGCTTGTTTTGATAACCAGAGTTCTGTAAATATCGTTATATTAAAGATGATTATAGAACTATAGAGTATATTTTTTTCATAACATTTTAATGACTTCTCTAGTCTGCTGCTTTTTTTTTTTTTTTTGAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTGGTGCAGTGGCAGGATCATGGCTCACTGCATCCTGATCTCCTGGGCTCAAGCAATCCTCCCACCTCAGCCTTCTGAGTAGCTGGGACCACTGGTGCTTGCCACCACACCTAGATAATTTTTTTTTTTTTTTTTGTAGAGATGGCATTTCGCCATGTTGCCAAGGCTGGCCTTGATCTCCTAGGCTCAGGCAATCCTTATGATTCAGAAATTGAAAAGAAGAATAGAGGGGAAAACAATAATGATGTCTACTATATACAAGATCATGTGTTTGCTAAGTTCTGTGCTTGGTGCTTGCCACGTCTCTAGCACGTAACTCTGAGTGGGATCCCAGATTTCAGATGAGGAAACAGCATCAAGAGGTTGACTGCCTTGCCCAAGGCCATGTGGCTCCCACATGATAGAGCTGGGACTCACACCTCGAGCTGCATATTCCAAAACCTGCTCTTTCCGTAACGTCATGTTGAAAAAAAAAAAAACAAAACAAAAACAACCTCTATGTTCTTATATCCACCATGGAAAATTCTCATCTGGGCTACCTTTTTCTTTTTTATTTTCTTGATACTTTCACTTTCTTGTCTAAGGAATTCTGAGCTAGAGTGAAGACCTGAATGGAAGTAGAGTGGTGAGATTGCTGAGTAGGACTGGACTGTTTTTTTCCCAGCCCTGCCCTCTGACAGATCATCTCCCCGTCAGAGACTGCCAAGCTGTTCTAAAGTGCAGTGTTTATGCCGTAGGCCTGCTTCTGCCTCTGTTTTTCCCCGAGGACCACCCTTGAGGATATGTCATTGCTAAACAACCTTTGGAAATGTCACTTTCTCCTTTGTGCTAGACATTGTTAAATCCTTTTAAGGGTTTTAAAATGGCACAAACTTTTGATTAATTATATCAAGAACTTCCCATCAATAACACTACCAAAATACTTATGATTCCACCCCTTGCCCCAGCTGCTGTATGTGGAAATGTGGAATGACATTTTATAGCCTGTATGGGCTCTGTTCTGAGTAGTCCTGTGTGGAGTTTTGATACAGTAAAAGTCTGAATTCTTTCATATCAGGTCCTGGTTTCTGCAGCTCTTCTTAATGTTTAAGCTTCTTGTGGTTGAGGCAGATGTTTTAGGTGATGGCAGAATCTAACACTATTTGGTTGATTTCAAGAAATTATAACCCACAGATAAAATTATGGGGATATAGTCAAAACCTTTCATTACATCTTTACAGGTACAAAAATTTTTCTAAGATTATATAACTTTCTGTACAAATGTTCTTTGCTTTTTTCTAGGTTATTTGAACTCTGAGTTTTCATTTCCTTTGGTATTAACAGTGATAGGACAGAAAGGTTAGCTGTGACCTTGTAATTTATAAAAGATTGCATATGGTGCACTGTTTTTAGTTTTTTGATGTTTTTCCCCTTTTGTTAAAATGAATGAACTACATAAAGCCAAGTGTTTTGACATTGATAAATCTCAAAAACTTAATGCTGAAAGGAAATAGCGAATTGTAGAATTCTTTTTCAAATCAGAATTTTCTTTTTCCTTTCAGCACTAAGTTTCTGAGATTTTTATATTCCCTAAACTGTGTAAATAAAGTTTGAAAACATGCAAAACAATAACACATATTGTTTAATATTACATACTCATGTAGAAGTGGTATTAAATGCTTGAGAATGATGAGTACTAAATTTATGGTTATAGTCACCTCTTGAAAGGGTGGGACAGAAGCAGGTTTGGCTTCAATTATATCTATAATGGTTTAGGTTTTTTAAATGTTAAGATTTGTTAAAGCTGGGTAATATCATTTGGCTCTGTCGCCACCCAAATCTCATCTTCAATTGTAGCTCCCATAATTCCCACGTGTCATGGGAGGGACCTGGGGGAGGAATTCAATCATGGGTCAGGTCTTTTGCATGCTATTCCCATGATAGTAAGTCTCATGAGATCTGTTGGGTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTGTGTTGCCCAGGCTGCAGTGCAGTGGCTGGAGTGTAGTGGCATCTCTCAGCTCACTGGAAGCTCCACCTGCCGGGTTGACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCTGCCACCATGCCCGGCTAATTTTTTTTTTTTTTTTTTTTTTTTGTATTTTTTAGTAGAGATGGGGTTTCACTGTTAGCCAGGATGGTCTCGGAGATCTGATGGCTTTATAAAGTGGAGTTCCTCTGCACATGCTCTCTTGTCTGCCACCATGCAAGTTGTGCCTTTGTTCTCCTTTGCCATAATTGTGAGGTCTCCCCAGCCACGTGAAACTGTGATCCCTTAAACCTCTTTCCTTTATAAATTGTACCCAGTCTCAGGTGTTTCTTCATAGCCATATGAAAATGAACTAATACGGTAAATAGGTACCATTAGAGTGGGGTACTGCTGTAAAGATACCTGCAAATGTGGAAGCGACTTTGAAACTGGGTAACAATTGGAACAGTTTGGAGGGCTCAGAAGACAGGAAGATTTGGGAAAGTTTGGAACTTCCTAGAGACTTGTTGAATGGCTTTGACCAAAATGCTGATAGTGATATGGACAATAAAGTCCAGGCTGAGGTGGTCTCAGATGGAAATGAGGAACCTGTTGGGAACTGAGCAAAGGTGACTTTTGTTGTGTTTTAGCAAAGAGACTGGTGGCATTTTGCCCCTGCCCTAGACATCTGTGGAGCATTGAACCTAAGATGATTTAGGGTATCTGGCTGAAGAAATTTCTAAGCAGTAAAGCATTCAAGAGGTGACTTGCGCATTATTAAAATCATTTAGTTTTATGTATTCACAAAGATATGGTTTGGAATTGGAACTTATGTTTAAAAGGAAAGCAGAGCATAAAATTTCAGAAAATTTGCAGCCTGAAGATGCAATAGAAAAGAAAAACCCATTTTCTGAGGAGAAATTCAAGCCAGCCGCAGAAACTTGCCTAAGTAAGGAGGAGCCAAATGTTAATCATCAAGATAATGGAATGGGGAAAATGTCTCCAGGGCATGTCAGAGGCCTTTGCGGCAGTCGCTCTCATCACAGGCCAGAGGCCTAGGAGTTAAAAAATGGTTTCCTGGGCCGGGCCCAGGGCCTCCATGCCGTGTGCAGCCTAGGGACTTGGTGCTCTGCATCCCAGCCATAGCTTAAAGGTGCCAACATACAGATCAGGCCATTTCTTCAGAGGTGCAAGCCCCAAGCCTCTGAGGCATTCATGTTGTGTTGGGCCTGCCAGTGCACAAGAGTCAAGAATTGAGGTTTGGGAACTTCCACCTAGATTTCAGAGGTTGTGTGGAAATTCCTGAATGTCCAGGCAGAGGTATGCTGCAGGGATGGAGCCCTCATGGAGAACCTACCTCTGCTAGGGCAGTGCAGAAGGGAAATGTGGGCTGGGAGCCCCCACGCAGAGTCCCTACTGGGACACTGCCTGGTGGAGCTGTGAGAAGAAGGCCACTGTCCTCCAGACCCCAGAATGGTAGATCCACTGATAGCTTACACTGTGTGCCTGGAAAGGCTGCAGACACTCAATGCCAGCCCATGAAAACAGCCAGCAGGGAGGCTTACCCTGCAAAGCCACAGGGGCAGAGCTGCCCAAGGCCATGGGAACCCACCTCTTTTATCAAAGTGACCTGGATGTGAGACATGGAGTCAAAAGAGTTCATTTTGGAGCTTTAAGATTTGACTGTCTCGCTGGATTTTGGACTTGCATGGGACCTGTAGCCCCTTTGTTTTGGCCAATTTCTCCCATTTGGAATGGCTGTATTTACCCATTTCCTGTACCTTCTTTGTATCTAGGAAGTAACTAACTTGCTTTTGATTTTACAGGCTGATAGGCAGAAGAGAGTTGCCTTGTCTCCAATTAGACTTTGGACTGTGAACCTTTGAGTTTATGCTGAAATGAGTTAAGATTTTGGGAGACTGTTGGGAAGGCATGATTGGTTTTGAAATGTGAGGACATGAGATTTGTGAGGGTCCTGGGGTAGAATGATATGATTTGGCTATGTCCCCACCCAAATCTCATCTTGAATTGTAGCTCCCATAATTCCCATGTGTCATGGGAGGGACCTGGTGGGAGGTAATTGAGTCATGGGGGAAGGGAGTTCCCATGCTGTTCTAGTGACAGTGAATAAGTCTCACAATATCTGATGGTTTTATAAAAGGGAATTCCCCTGCACAAGCTCTCTTGTTTGCCACCATGTAAGACATGCCATTGCTTCTCCTTTGCCTTCCACCATGATTGTGAGACCTCCCTAGCCATGTGGAACTGCAAGTCCATTAAACCTGTTTCCTTTATAAATTATCCAGTCACCAGTATTTCTTCATAGCAGTATGAAAATGAACCAATACACTGGGTGTCAGGTAAATGTTTGGAATGTTTCATAATCTAACAAAAGGAGGTCAGTTTACCTAATGTTAATAAAACTCAACTCATAAAATTTCTAAGGTATTGCAACTCAAGCAAGAAAACCTAAATATGGTATCATGCTATGTCTATCCAGATGTTTTTGTTTGCATGTTTGATTCCTTTGTTGAAGGCACTGAATCCCTGCAGGAAGTAGCATGAAGGATTCTGCTTTATAGCTGAGGGATTTGTAAGATGAAAGGTCCTTAAACATGAAATGAGATCAGTGGTAAGCTCATGATTTAAATTGTTATTTGAAAAAATTGTTTGATCTGCTCCCTCCAGGGGGGAAAAACATGGTGATATCCTAGATACAATGTGACAATACATTAATTTTTTTTCTTCCTTAG
Seq C2 exon
TATCTAGATCACCATGGCGACTGGACAGAAGTTGATGAGAGCTGTTAGAGTTTTTGAATTTGGTGGGCCAGAAGTCCTGAAATTGCGATCAGATATTGCAGTACCGATTCCAAAAGACCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116791-CRYZ:NM_001130043:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF082407=ADH_N=PU(2.1=5.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)