DreINT0052434 @ danRer10
Intron Retention
Gene
ENSDARG00000016074 | cryz
Description
crystallin, zeta (quinone reductase) [Source:ZFIN;Acc:ZDB-GENE-050306-24]
Coordinates
chr2:11329133-11331806:-
Coord C1 exon
chr2:11331755-11331806
Coord A exon
chr2:11329283-11331754
Coord C2 exon
chr2:11329133-11329282
Length
2472 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
AATACTTCTTGTTTTTGTAGGTA
3' ss Score
9.5
Exon sequences
Seq C1 exon
GGCCCATGCAAAACCAGGAGAAACCGTTCTTATCCATGGAGCCAGTGGTGGG
Seq A exon
GTAAGAAAATTAAAAATGTACCTTAAATGAATAGTTCTTCCAAAATTGAATTCTGCTGTTCATTTACTTTCAATCTAAGATCCATGGTGACTTTGGCAAAACTATTAACCAGTTCAAGAAACCGAGGATTATTTGCCCATTATTATTGCAACATTATCTTATTTGCAGCATTGTTATCTGCCAACTCCTCAAACAAAAACACAAGCTTGTTTGTTCGTACTCATGCTAATCTTTGATGCGATAACTTGTATACAAAAGTGTTAAAGAGCATCAGCTTTCATATCAGTTTGTCATTTGTCATAATATAAAATAAAGCTTGCTCTTTAGACTTCTAAAAGAGTCATAAAAGCACTCAGTTACTTTTAGTTACTTTTAAAAGTAATATATTACAATCCTGAGTCACATTTAAACAAAAAGTAACTAAATGTGTGACTTGGGGCTCTATTTTGACGATCCATGCGCAGTCCAAAGCGCAGGGTGCAAAGCCGCAAACACATAAAGGGCATGTCCGAATCCACTTTTGCTATTTTAAGGATGGAAAAATCCGCCTTGCGCTTTGGCGCATGGTCTAACAGGGTTGAGCTTATTCTCTTAATGAGTGATAGGTGTGTTTTGAGAATAAACCAATCAGAGTCTCATCTCCTATTCCCTTTAAGAGTCAGTTGTGTCGCGCCATGGCGCATTTGCTATTTACATGACGGACTTTGTAAGTGGAAAAACTGAGCGTTTCACTAGTAAGAAAACAGTTAAACAGCCTCCTCATTCTTTACTTTCATTTTCACTCTCGTGGATAGGGAAACTTGTTGTACGCACAGACATCCATTAGCCTATAAATAATTAATTTCGTTTGTTAAGCTCAAATATTTGTTTCAAAGCTATTTCTAAATTAAACATGCTGTGCCCCATATGGTCTAAAACCTGACAGGTGGACAAATCTAAGCTTGTTTTTAATAAAACAAATATAAATATGGATATAATAAATAATACCGCTTATAATAATAACAACATTATACAAAAGCTAATTGTTATGAATAAACTGAAATAGCCCCTCGAGATGAAGACATGAAATTATAGTTTTTATTTTTATGTAGGTTACAAAAAATAATTATTTTTGTAATATTTTAATCCTTTAATTCTTTTTTATATGTAAAGATATTTGCGTATTGCTGTATATCCTGTGTGTATTAAGCAATGTGTTAGTGAGGCGCACAACTAATGCACTCTGCGATGGACTTTAGGCCTGCTTTGATCTGGTCTATTGAATTGTCTATTATAGTTCAAGATAGCAACATGCCAGCAATGCGCCTCAACACACCTCCTTTTTTAGACCAGAACCCCTATGGGCGCACATATGTGCGCAAATGCATTTGTTATTTAAACAGCGTGGTGCGAAACGTCAAAATGACTCTTGTGCCGAGCTGAAACTAGCAAACAACAATTACGTCACGCCTTGCGCCGGGTGTATGATATGGTCCTTGGTTACCTATTATGAAAAGTAATTTGAAAGTATGTGTTATGTTATTTAGCATTTTTTAAAGATAAGAATGTTGTAAATAATGTATAATTTCTTGCACAGATCAATAATTTCACTTCATAAGACTTTGTTGTAATTCGACTTCTCATCAATTAGAAATTATCAGACAGGAGGTTTTGAATATCAGAAAATATTCTCCTCCTCTTTCTCTTTTCTTTCTAAAGTCTCTCCTGCTCCTTCTAAAGTCTCTGTGTTTTCCAACAATCTTTATACAGGTTATTTTCCACACCACTGGGTGACTTGTTTTAACTTTTAACCATTTTAGGATAGATTTTTACTCTAGGTGGTCCTGCTATTCTTGGCTCTCAGCCTACTAGCTCATGTCAACAGAGATGTTACAGGTCTGTGTCAGCAACTGTTTTGACACAAGAGCATAGATGCAAAATAACTAAGTGTTTACATACATCGTCATGATAGGATAATAACTTGATAATATGTTACTCATTCTAACTTCTGACACATACTGTATAGCTTCATACAAGTATTTAACATATATAATCAGTGCTTTACATATTCAGTTATTCTACACAATCAGTCACTTTAGCATAGCCTTCTCCTAGTGTTGCTCCTGTGCAGGCATACTCATCTTACACAGACATATCACTGTATTTTTAACACAGGCTGGCATGTTTGCTGCAAACACTACATACATTTTGAGAAGAGAAAATTAACTGCTTTACAATTAGAAAATACTTCACACTGAGAGAATAGAAATCTTCTTCAACTTCAGGATATATCATAAGATGTATCATCAAGAGTCATGGGTGTGTTTTTTATTAAAAGGATCATAAAAAAACATAAAAATCAGCTTAAATTTTCTTTATTGTTCTAATGGGAATAAAACACACCGTCTTTGGTGCCTTGAGGGTATATATTTGGATATATTGGATTATGGTTTGTTCCTTGAAGTCTTGAATAAATACTTCTTGTTTTTGTAG
Seq C2 exon
GTAGGCATTGCAGCGTGTCAGATCGCACGAGCGTTTGGTCTTAAAGTCCTGGGTACAGCAGGTACTCCTGAAGGGATGAAGCTGGTGCTCAATAATGGAGCTCATCTTGCTTTCAACCACAGAGAAAAAGACTACTTGGAGAAAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016074:ENSDART00000131836:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=PU(0.1=0.0)
A:
NA
C2:
PF0010721=ADH_zinc_N=FE(38.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]