GgaINT0035730 @ galGal4
Intron Retention
Gene
ENSGALG00000011361 | CRYZ
Description
quinone oxidoreductase [Source:RefSeq peptide;Acc:NP_001073231]
Coordinates
chr8:28535160-28536558:-
Coord C1 exon
chr8:28536507-28536558
Coord A exon
chr8:28535310-28536506
Coord C2 exon
chr8:28535160-28535309
Length
1197 bp
Sequences
Splice sites
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
3' ss Seq
TCCTCCTCCTTCCCCCTCAGGTG
3' ss Score
12.51
Exon sequences
Seq C1 exon
AGGGCATGCCAAAGCAGGGGAAAGCGTGCTAATTCATGGTGCAAGTGGAGGC
Seq A exon
GTAAGTATTCTGAAAAGGCAAGTTATTAAAATGGGGTTTTCTGTCCTTGTATCTGCCTTTTTTTTTTTTACTCCGTTCTGTGATTTCTGCTTACGTTTATATCAATAAACATTAACAAAAAATAAGTCTCTCTTCAGACACTTTAGGATACTTGTTTTCCTAAAGCAAAAACCTTGTTATCCCAAGTAACCATGAAACTACCTGAGGGATCCGATAAGGCCCCCTGTACAGCGGGTTCTGTGATAAATACATTGCTGCAGGTGAGCCAGAAGCTGTATGATAAAGCTGATAGCAATAGCTGTGATTTTTGATTATGTGCAAGGTGTTCTCAGTTCTCTGAAAAGCAATCACTAGTATGTAGCAACTATGCATTTCTGGGGTATTTTTTCCTACCAGCTAACAGCTAGCTTCTCATGGAGAGATACTGGAGTGTATTGGTCCATGGCTGAGTACTGCTTGAAATTGTACATCTGGTTTTCTTTGGTTTTACATGACAGAACTTCAGATCTCTATCATGTGACATTCGAGTTTATCTCATCTCTCATCCTCTGCATCTTCAGCTTCTACTGATGGACAAACAGCTGCCTTCAGCTGGCAAACTTTTATGAACTGTTTGTCAGACAGCACAGTGCTGATGAGTCTCATGTGGGAAAGCATTCTCATTCTAAGATACTAAATTGACATGCAGTATTGTAGCAACTTTTTCTTTTTTTCCCATAGGCTAAACAGTGCAAAGCTGATATCCTGAAAATGCAATGTCTGAAGATACCGTTAGATCTGTGAGAGATGTAGAAGTAGTACTTGTAAGATTGTGCCTGCAGGTTTTCTTTGCAGCACACAGTGCTGGTAGTAGCAGCAGGTGATTCTGTAAGAGTTTTCTTGTCTGTATATCAAGTCTTATTTGGACCAGTTTTAACAGATGAACAACTTTATGTGTGGATTCATAGCAAATGCTGATGGCCGTTAAACAAGCAGACAAACAACACAAGACACAGAACTTCATTACGCCTGTGGAAACATCCTTTCCTTTTTTAATACTATTGGGGTATCTTTAAGATACAATTTAATTACTGTAGCTGAAGAAATACATGACCAGGCAAACTTTTAAAGCAGTTAAGTTCCAACTGGTTAATGTATCAAATTTAAAATGCAGAGAGTTGTTCTTGCTGTTGTGATTTCCTCCTCCTTCCCCCTCAG
Seq C2 exon
GTGGGAATAGCAGCATGTCAGATTGCCAGAGCTTATGGCTTGAAGGTTTTGGGCACAGCGGGAACCGAGCAGGGTATGAACGTTGTTCTGAGAAATGGTGCTCACCAAGCATTTAATCACAGAGAAGCTAACTATCTTGACAAAATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011361:ENSGALT00000018533:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=PU(0.1=0.0)
A:
NA
C2:
PF0010721=ADH_zinc_N=FE(38.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAAGCAGGGGAAAGC
R:
TTTGTCAAGATAGTTAGCTTCTCTGT
Band lengths:
190-1387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]