RnoINT0042405 @ rn6
Intron Retention
Gene
ENSRNOG00000028319 | Cryz
Description
crystallin zeta [Source:RGD Symbol;Acc:1311639]
Coordinates
chr2:260902260-260906711:+
Coord C1 exon
chr2:260902260-260902311
Coord A exon
chr2:260902312-260906561
Coord C2 exon
chr2:260906562-260906711
Length
4250 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
GAGAATGTTTTGTTTTTCAGGTT
3' ss Score
9.83
Exon sequences
Seq C1 exon
TGCCCGTGCTCGAGCTGGGGAAAGCGTTCTTGTTCACGGGGCCAGCGGAGGA
Seq A exon
GTGAGTATCTATAATTTCAAGTTGTACTCAAGTGAGTATGGAGTCACGGGTCTTACATGGTAGTTCTTGGAATCTCTGTATCTTTGAAGTTTCCAATTTTAAAAACTTAATCTCTGAGGAGTTCTTCCATGGACTCGGTGTGTTCGATCTTATCTCCCAGTGTAGCCCTCCCAACCTCATGCCCTTCTCCTCCTCCTCTTTTAAAATAACCCACTGTGTACAAAGTCAGTGGCACCCAGATGAGAATCCGTCTGCAGGAGCCCAGGGTGCTCTTCCTCCCCAGCAGCCATCAACTGACAGTGGCCTCCCTGGAGCAAGGCCTTGGGAGCTGGTCACCTGACCATGCTGGCCATCTGACATCGTACAGGATGAAGTCATTCTGAAGAGCCGCACCCCGACCCCCTTAGTGCCACGAAGCTTCTTCAGACGTAGGCTGCTGAGGCGAGTCCATGCCTGATGCTGTAGCCTTTCATGCTTAATCAACTCAGCAGATCGTCTCATAAAATATCAATGTGGTGGATTTTCCACCTGTGCTGGGAGTGCACCAAGACTGGCTTGCCTCTGCTTTCACGAGGCATGGTTCTTAGAATTATGTGGCATTTTAAGCTGTTTTAAACATTAACCGTAGTTGTTCTATATTCCCTTAGATAGCAAAGCAAACCTCTCAGCCCGTGAGCGGTCAGCTCCGCTCCTGTCTGCCAGGCTCCCTGGTGCGCCACCAACAGGTCACACTTTGATGGCAACCAAAAAGTGCACAGTATATAGCTGTGTCCTCAACACCATACCCCAAGGCTGAAAGTGTTAATGTTTAGTGGGGAAAGGACTGAGAACTCAGCACCTACACCCTCTAAGGAATCCCCAAGCAGAGCATTGTCAGAACCCTCAAGTAGGTACCTCACTGCTGATCCATCTCCAAGGAATGTGGAGGAGAAGTCAGAGTGGTGCATTCGGAATTTACTAAGCCAGCCCGGAGAGACTTGGAAATGTTGGTGACAAGATTTCCCATTTTTAAAACCAAGGGCTTGCGGAGTGATGGCTCACCTGCAGGTCAAGCCTCAGTACTGGGTGTTCTCGGGGGGTGGGGGGCATGGAAAGGAGTAACTCATTACCCAGCATGCCCCACGTGATGACAGTGTCATCCTGACAGTATGGCTCTGCCTCTGAAAGTGGCCAGGTAACTCAGGAAGTCAGACTACTCTGTCTCTTTAGACATGGACTTCCTTATTTCATATCTGGCTTCCTCGATGACTCAGAGATCAATCTGTAGGGATTTCACGCATCAGACTCTTTTAAACCAAAAAAGTCCAAAGTTGTCTCTGTAGGGCTTGAAACAACAGCTAAACTCATTGTTAACCATCTCCAAAGGCTGGTTTTGGATGAGTTAAATTTAACCTAATAACCGAAGGTCTGAAACACACATGTGTTTATTTAAATTGCTAAGGTTGTCTGAGAGCTCTATGCTCTGTAGAGAAGAGAGATGTTCGTACAGTGGAGAGAAGGTTTAGAGGAAATCCCTTTACACCCTGAAAAAGCCCTGCTACTTCAGAGGGATTGGTTCCCTTTTGAAAAGGTGAAATCCAAACTGTTGTTTTTCGGAGCTGGCCGAGTCTGCTAAATCCTGGCTGGCTGGGACAGGCTGGGGCCGGCATGTGAAGCACCCCTGATCCTCCTGCCCTATCAGAGGGAGACAGCACCGGCTTTTGCCTGGCTTCTGTTTGTACCTTCTGTATTCATTTAATCCACACTCCGGCTGGATTATGTTGTGGGTTTAAAGTGACATGGATTTGCGAATGCAGCCATTGTCCCAGTACATTGGTGGGAGAGTTTCACTTTAGTGTTCATGAAATAAATTGGAGAAAAATAATAGGCAGAAAATGCCATGTAATCTCTTGAAAAAATACCGTGAGTCTAATTGTTGGCAAGAAAATAGTAGCCAGAGTCCCTTAGAGAACTGAGAGACTGCTCTAAGGAGCCATTAGGTGATACGCTTGCATTAAGTCTGTGCCTTAAAATGTGATTTCATTAGATTCATCGTCTTAATAGAATGGTTAAGTCATTGGAGTCTATCGCAGTGACCCCATAGGACAGCGTTTCTCCTAATAGACGGCTGTGTCCTTCATTGATACCTGCATACCTGCCTTGGTTAGGTTACAGAAAGCCTGCCAGAGCCCCATCACTGCTTGGACCTGCAGTCCTTAGGGCTGCTTCACCCAGGAGAGCAGGGCTGCCCACGCTCCAGTGAGTCCCCTATTTTCCATTGTAATTGTTTTTGCTGTCTCACTCAGTTCCATTGACCTTCCCAACCAGGGCTTCTTCACTTTGTAAATTGAGGTTTTCCATTTACTTTGTGTGTCTGTGCAAGCCTGTGATGATCAGAGGACAATTTGCATGACTTGGTCCCCTGCCTCCACCAGATGGTTGCTGACTTTTGGCTTGGTGGAAGGCAGCCCAGCCTGCTGATCCCGTCAGTGTGTGTCGGTTAATGCTCTGTCTGAACTGCATTGGGTTAGAGCGTTCGGCTTTAACATGACAGTCTGATTGGGGAGGGGAACACACTCAGAGATGGCCTCTGGCCTCAACACGTGGACCGGGCACATACGCCAGCACATACACACGCACACACACAAAGAAACCTTGATTTTAAAAACTGCTAGTGAATTGCTGCCTCGAGTTTCATTGAAAAATAATGCACTAAGTTTTGGCTAAGGAGTAGAATAGAATTTTTAACCATTTCTGAAGTCGGCCTAAACATGTCTGCCACTTCAATATTCATATAATTTAATAAATATTACCTATTTATGTGAAATGTCATTACCCTTGATGCTCTTAAGGTCACAATAACGGGTCAGACTCTGAGACTACTGGTTCATGTGTATGTTTCATTGGCCTTTAATACCTAACATCATATGAAATCCAGTCAAGTGCAGTCCTGAGTAGAAAGTGTTGAAGAAGTCCTGGCCTGTAAGAGGAAATAACAGCCAAGCACAGCGGCTCACAGTCAGAATCCTAGCACATGCAGGGCCTGAGGCAGAGGATTACCATGAGTTCAGGCCAGCCTGGGCTACAAAATGAGTTTCTCAAAAGAAGAAATAGCTGACTCTGTATTTCTTTTCTTTTCAAGCAGTAAGTGCCTTCCTAAGTTTGACTCTGAATAAAACAGGCTACAATATGAAAACCTTAATACAAATCACCACTTTGTCCACACTTAGCGGGGTCTTTGTCTGTATGCAGGCCAGACTCCGGAGGTCAAAGCTGCTGGTGCTCCCTGGATGCTAAGGCTCTCCAGACCGCCATGGCTCTCTATGTGGGCCAGAGCCTTTACCTTGCTGTGGACCTTGGCCGTCCATCTCCATCGAGTCATGAGCTGGGTCTCTGAGCCATGCCATGCCTCTTTCTGCCTTTTGAACACCCAGAACATGTTCCCACCCTACCCATTTAGCCATCCCTGCCCTTTACCACCTGCACCCCCTTCTCCTCATTTCAACCCGGTAGCCTAGCCAGCCCCTCCCAACCTCTTTAACCCACTGCAGTTTAATTATTTTCCCAGTACTTTCTGTTAATTTCACTCACTTGTTAATTGACATTTATTACCTCTTTTCTCTTTAGAATGCATTTTTTTTTTTTTTAGCATTAAGTCCATGGGCACATTTCTAACTTACATGGTAGAGGCCTTATGCTTGTTATAAAGAATGTGTTATTTAATTGGTTAAGTAAAGCCAGGAAGGAGTATCAAGGCAGTCTTTAAAGACTGCACCTCCTGCACAAAGCACGTATTAACAAGTGTTCTGCTGCCCAGTGGTTACCTCTACAGTCTGGTTTGGCACTGCTCTGCCGACTTGCTCAAGGCCCCTGTATTTCGGAGCTTACAGGTCCCCATCAGCATAACACAGACAGTGCTGGAGACCTCAGCAAGCACTGGGAAGCCCTGAGCACAGCATAGGGAGACTGCGTCTTCAGGAGGGGTCAGCAGTTGGGCAGCAGTTCTCACCCTTCCTAGTACTGACGCTTTAATACAGTTCCTCATGTTGCAATGACCTCCAACCACAAAATTATTTTCATTGTTACCTTATAATTGTCATTTTACTGATGTTGTGAATTGTAATATAAATATGTGTGTTTTCTGATGGTCTTAGGTGACCATCAAGGGACCGTGACCCACACAAGTGGAGAACCACCACAGAAATGAGATCTGCAGTTCCCCCTAGGCACTGGAGGCTTCGAGGGAACATGGAGAATGTTTTGTTTTTCAG
Seq C2 exon
GTTGGATTAGCTACATGCCAGATTGCCAGAGCTCATGGCTTAAAGGTTTTGGGCACAGCTGGTTCTGAGGAAGGAAAAAAGCTTGTTCTGCAAAACGGAGCCCACGAAGTGTTTAATCACAAAGAAGCCAACTATATTGATAAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028319:ENSRNOT00000032808:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=PU(0.1=0.0)
A:
NA
C2:
PF0010721=ADH_zinc_N=FE(38.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]