DreINT0054109 @ danRer10
Intron Retention
Gene
ENSDARG00000033566 | cyp17a1
Description
cytochrome P450, family 17, subfamily A, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040213-2]
Coordinates
chr13:28472016-28474153:-
Coord C1 exon
chr13:28473984-28474153
Coord A exon
chr13:28472120-28473983
Coord C2 exon
chr13:28472016-28472119
Length
1864 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
GTTCACTCTTATTTGTACAGTGT
3' ss Score
5.33
Exon sequences
Seq C1 exon
GTTCAGAGAAAGATTCAAGAGGAGCTCGACAGTAAGATTGGGAAAGAAAGACACCCTCAGCTCAGCGACAGGGGGAATCTACCTTATCTAGAGGCCACTATCAGAGAAGTGCTGAGGATTCGACCTGTTTCTCCGCTCCTCATCCCTCATGTGGCGCTGCAGGACTCCAG
Seq A exon
GTCAGGGTATCCGCGGTGAATCTCAAAAGCTAGATTTTAGGCCTTAAAAGGTCTTAAATCTACTGAAATGTTGTGTTTTGGGTCTTACATAATTTTTGACAGTTCTTAATTTTCCTGTTAATTTATTTTCTTAATTGTATTATTATATTATTGTTTTGTTCTATTTTTGGTAAGAGTTATGGGGTTTGTGAATGAGTATATTTGAAAAAAATTATTGTAAAAAAAAATTATAATTGTATTAAATTGTAATAATTTTTTGACGGGGGAAGTGAAAATCTTTTCTAACTGGGACGTTCGAAAAAATCCTTAGCATTTAGACCTGTCTAAGTCTAAACTTACATTCATCATGGTCTTAAAAATGTCTTAAATTTTTTAATTTAACTTGGTAAAACATGAAGAAACCCTGCCAGGTGTTTTTCCCTTTAGAGGATTCAATATGGATAAATATTATTAAATGAATGGAAAATCTAAACGCATTTGTCATATATATGCTAGTTTCTTATAACTCACTTGTCTTTTAACTTTTGTCTTTGCCATGGTGACAGAAGGGGGCTAATAAAATTTTATTATTAAAATTAAAATAAATAAGATTTTCTTCAGAAGGAAAAATAGTAGCCTATGGGAAATACTGTGAAAATTTTACCTGGGGAAAAATATGAAAAAGAAAAATGAAAAATTCACAGGTATTAAATTTGCATTGTAATAATTTTGCTTTGAACTGTGTCTATATTTTTCAACACCATTCTAACTTGTCAACATCATATTCATCAAAAATTCTAATGGAAAATTTAATGCGCACAATGTTTTTAGAATGCATAAAAACAACCAAACAAAATGTTTTCAACAAATGGCATTTGTAAATCTGTTTATCACAACATTTTTCAAATCTATTATATGATTTCGTTGCTACTTGTTTTCAATAACAGAATTCAGGAGAGAATGTTACATAATTCAATCAGTGAGTGGATGTACCCTCATGAAAAGATAACATCGTAATTTATAGTAATTAGTTTATTATCTCAACATTCATTCATTCATTTTGGGCTTAGTCCCTTTAATCAGGGGTTGCCACAGCGGAATGAACCGCCAATATATGCGGCATATGTTTTATGCAGCGGATGCCCTTCCAGCTGCAACCCAACACCTGGAAACACCCATGCGCTCTTACATTCACACAAATACACTAAGGCCAATTAAGCTAAACTTATCTAGCATATGTTTTACATAGTCCCTTTCAGCTGCAACCCAGTTCTGGGAAACATCCATACAAACTCACTTGCACATAACCTACAGCCAATTTCTTTATTCAATTCACCTATAGCGCATGTTTGGTCTTGTGGAGGAAACCCATGCAAACACGAGGAGAACATGCAAACCACACACAGAACTGCCAACCGACCCAGGCTCAAAGCAGCGACCTTCTTGCTCTGAGGCGATCATGCTACCCACTGCGACGTTGTGCTGCCTTGCACTCAACATAACTAATCTAAACCCTTCTGACTTTCTATGGTTCTATTTTTCAGTGCTGCAAAGAGAACAAATATGCTAAATATGAAGCAATGAGCACATATATAAGAGAATTTGTAGAATTTATATATTCACAGATATAATGATGAATTGATATGCATTTTTATTCATTTTAGTGGCTTCTTTTATATAATAAAAGCCCATGTTCATGTCTGAGCCTCATATAAACTTCTGTTACACTTCTTACATTTCTGTCAATCCTCTTAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAAATAGAGTGAAAACCCTTATCGTCTTAGACTCATGCTAATATTGAAATGGTTCACTCTTATTTGTACAG
Seq C2 exon
TGTTGGTGAATACACAGTGCAGAAAGGGACGCGGGTCGTTATTAACCTCTGGTCTTTACATCATGATGAGAAGGAATGGAAGAACCCTGAGCTCTTTGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033566:ENSDART00000043156:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.1=100)
A:
NA
C2:
PF0006717=p450=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAAAGATTCAAGAGGAGCTCG
R:
TGGGTCAAAGAGCTCAGGGTT
Band lengths:
270-2134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]