GgaINT0044920 @ galGal4
Intron Retention
Gene
ENSGALG00000008121 | CYP17A1
Description
steroid 17-alpha-hydroxylase/17,20 lyase precursor [Source:RefSeq peptide;Acc:NP_001001901]
Coordinates
chr6:22925398-22925741:-
Coord C1 exon
chr6:22925572-22925741
Coord A exon
chr6:22925502-22925571
Coord C2 exon
chr6:22925398-22925501
Length
70 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACACTGTGTCTGCCCTGCAGCAT
3' ss Score
9.59
Exon sequences
Seq C1 exon
GTCCAGAAGAAGATCCAGGAGGAGATGGACCAGAAGATTGGCCTGGCACGTCACCCCCACCTCAGTGACCGCCCACTGCTGCCCTACCTGGAGGCTACCATCAGCGAGGTGCTGCGCATCCGGCCCGTGTCCCCCCTGCTCATCCCACATGTGTCCCTTGCTGACACCAG
Seq A exon
GTGAGGCTGCCCAGGGTGTGGGCAGAGGCTGGGGAGGGAGCGTCCATCTCACACTGTGTCTGCCCTGCAG
Seq C2 exon
CATCGGTGAGTACTCCATCCCCAAGGGCGCCAGGGTGGTCATCAACCTCTGGTCCGTGCACCACGATGAGAAGGAGTGGGATAAACCTGAGGAGTTCAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008121:ENSGALT00000033172:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.1=100)
A:
NA
C2:
PF0006717=p450=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTACCTGGAGGCTACCATC
R:
CACTCCTTCTCATCGTGGTGC
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]