RnoINT0044160 @ rn6
Intron Retention
Gene
ENSRNOG00000020035 | Cyp17a1
Description
cytochrome P450, family 17, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:2456]
Coordinates
chr1:266422995-266423914:-
Coord C1 exon
chr1:266423745-266423914
Coord A exon
chr1:266423099-266423744
Coord C2 exon
chr1:266422995-266423098
Length
646 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
CGTCTCCTTGTCTGGGTTAGCAT
3' ss Score
5.42
Exon sequences
Seq C1 exon
GTGAAGAAGAAGATCCAAAAGGAGATTGACCAGTACGTAGGCTTCAGCCGAACACCAACTTTCAATGACCGGTCTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTGCGTATCAGGCCGGTGGCTCCCATGCTCATCCCCCACAAGGCTAACGTTGACTCCAG
Seq A exon
GTACGCCTTTCTTCCCGAGATATCAGCCTAGGATGTAGCCACTGGCTAGCCCACTTTGCTCCTCAGACATGTTCCACCTGGCCTTAGTTGCTGGTCCACCTAGAGTCAAACAGTGACTACCACTGTCAATCACCCTGCCCTAGCTACTCTATCTACCTCCACTGATACCCACTGACTAAGTTGAATTGGCATCAGCATCTGGCTTCCCTCCAACTTCCTGCTACCCTGGGAGACACAGGTCTCGGCTGAAGGACTGGGTGATCAAAGTCCAACCTCATCAGGGGGCAGTAGTATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACCCATGCCTGCATGCACATGCACATACATGTGCACCAGCTTCTGAAACAGACACCCATGTGCTGACTAGCAGAAATGTCCACATACGTAGGGTTGATAGGCAATGGCTAAGGCTGGATCTAGATGCAATCCTGGCAGAAGCCAGAAGCTGAGGGAAAGGAGTGATTGAGAATGGGGGAGGGTTCTCCTCCCCCAACCCCCAAGTGGGGATGTGGAGCTGAGCAGAAAGGAGAGAACAATCTTCCTTTTTCGTCTCCTTGTCTGGGTTAG
Seq C2 exon
CATTGGAGAGTTTACTGTCCCCAAGGACACACATGTGGTCGTCAATCTCTGGGCACTGCATCACGATGAGAATGAATGGGACCAGCCAGATCAGTTCATGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020035:ENSRNOT00000027160:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.139
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.0=100)
A:
NA
C2:
PF0006717=p450=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGAAGAAGATCCAAAAGGAGA
R:
GCATGAACTGATCTGGCTGGT
Band lengths:
271-917
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]