GgaINT0044920 @ galGal3
Intron Retention
Gene
ENSGALG00000008121 | F1NYI7_CHICK
Description
NA
Coordinates
chr6:24818489-24818832:-
Coord C1 exon
chr6:24818663-24818832
Coord A exon
chr6:24818593-24818662
Coord C2 exon
chr6:24818489-24818592
Length
70 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACACTGTGTCTGCCCTGCAGCAT
3' ss Score
9.59
Exon sequences
Seq C1 exon
GTCCAGAAGAAGATCCAGGAGGAGATGGACCAGAAGATTGGCCTGGCACGTCACCCCCACCTCAGTGACCGCCCACTGCTGCCCTACCTGGAGGCTACCATCAGCGAGGTGCTGCGCATCCGGCCCGTGTCCCCCCTGCTCATCCCACATGTGTCCCTTGCTGACACCAG
Seq A exon
GTGAGGCTGCCCAGGGTGTGGGCAGAGGCTGGGGAGGGAGCGTCCATCTCACACTGTGTCTGCCCTGCAG
Seq C2 exon
CATCGGTGAGTACTCCATCCCCAAGGGCGCCAGGGTGGTCATCAACCTCTGGTCCGTGCACCACGATGAGAAGGAGTGGGATAAACCTGAGGAGTTCAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008121:ENSGALT00000013182:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.0=100)
A:
NA
C2:
PF0006717=p450=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTACCTGGAGGCTACCATC
R:
CACTCCTTCTCATCGTGGTGC
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]