DreINT0054252 @ danRer10
Intron Retention
Gene
ENSDARG00000098995 | cyp2k6
Description
cytochrome P450, family 2, subfamily K, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1571]
Coordinates
chr3:12673981-12674938:+
Coord C1 exon
chr3:12673981-12674122
Coord A exon
chr3:12674123-12674205
Coord C2 exon
chr3:12674206-12674938
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
CTGTTTATGATTTCTCTCAGGAC
3' ss Score
8.84
Exon sequences
Seq C1 exon
GGCACCCCTGTGTTCCCACTACTGGTCTCTGTGTTGAGGGATGAAAATGAGTGGGAAACGCCTGACAGCTTTAACCCAAAACACTTTCTAAATAAACAGGGACAGTTTGTGAAAAAGGACGCCTTCATGCCCTTCGGTGCAG
Seq A exon
GTAGAGGAAACTTTGAATTCATTAATTATATTTATCCCATCACAGGTGCTTTTTTTCAGTCTTCTGTTTATGATTTCTCTCAG
Seq C2 exon
GACGCAGGGTTTGCATTGGAGAGAGTTTGGCCAGGATGGAGCTCTTCCTCTTCTTCACGTCTCTCCTTCAGTATTTCCGCTTCACTCCTCCTCCTGGAGTGTCTGAAGATGATCTAGATCTCACACCAGTAGTGGGCTTCACACTGAATCCGAAGCCACACCAACTGTGTGCAGTGAAACGGTCTTAGAAACATCATACATGCTGTTAAAATATTATCTCTCATTGTATTAACACTATTTTTTGCTTGTATATTTACCAGCTTTCCATTTGAAGCAGATTCATTGTTTATCGCTTTTTTTTTTATATAAATAACACTAGCAGACCTCGCTGTTCTTCAGTGTAAGAGCATGCTAAGTATGTAAATACATTTAGCACAGAAAAATAAATCAAAGACAGTTAGTAAAACCTAAAACTGAAGTGCAATTGTGATTTTTGTTCTTCTTTTTTTTCCTGAAAGCTCTAATAGTGCTGTTGTTGCCTCATTGTACTGAGCTAAGTACATTTGACTGTGTCCCTGTTCCTATTCTGACCTTTGCACTTTCTATTATTTGACTGTTTCTGCCACTTTATCCTCCAAGATTTGCAATTAATATGTCTTTCTATGCTATTTTAGTATTTTTAGCTATAAATCAGAGATAAATGTTTGATATGAGTACATGAGCAATTTGTTTATTTGTGTTATCACAGGCTGAACTCTCTGCAGGATGTATGATTAAAGGCGGTTGCAGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098995:ENSDART00000170788:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
NA
C2:
PF0006717=p450=PD(12.4=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTGTTCCCACTACTGGT
R:
TCCTGGCCAAACTCTCTCCAA
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]