RnoINT0044425 @ rn6
Intron Retention
Gene
ENSRNOG00000028891 | Cyp2t1
Description
cytochrome P450, family 2, subfamily t, polypeptide 1 [Source:RGD Symbol;Acc:620086]
Coordinates
chr1:83968946-83969465:+
Coord C1 exon
chr1:83968946-83969087
Coord A exon
chr1:83969088-83969179
Coord C2 exon
chr1:83969180-83969465
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
3' ss Seq
ACCTGCACCCACATCCACAGGAA
3' ss Score
7.38
Exon sequences
Seq C1 exon
GGCACCTTCGTCATTCCCTTGCTTGTGTCTGCACATCGGGATCCCACCCAATTCAAGGACCCTGACCATTTCAATCCCACCAATTTCCTGGATGACCAGGGCGAGTTCCAGAACAACGACGCCTTCATGCCCTTTGCCCCAG
Seq A exon
GTTTGGGCTGGGAGGGAGGGAAGCTGGGTGGCTAACACTGGGGGACTGGCAAGAGGTGCTTGCTTACCCCACACCTGCACCCACATCCACAG
Seq C2 exon
GAAAGCGGATGTGCCTGGGTGCTGGCCTAGCCCGCTCTGAGATCTTCCTCTTCCTGACGGCTATCCTGCAGAAGTTCTCCCTGCTCCCTGTGGGAAGTCCTGCTGACATCGACCTTACTCCACAGTGCACTGGTCTAGGCAATGTGCCCCCAGCCTTCCAGCTCCGCTTGGTGGCCCGCTGAGGTTGGGCTTCAGTATTCTGATCTCAGTGGCCTTGATATCCTCACTGCCCTAACTGTACGTGTGAATCTCTTTACGGAGAGGAATACAAGTGTGTGCAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028891:ENSRNOT00000068322:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.3=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGAACAACGACGCCTTC
R:
GTGCACTGTGGAGTAAGGTCG
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]