DreINT0054269 @ danRer10
Intron Retention
Gene
ENSDARG00000042978 | cyp2p6
Description
cytochrome P450, family 2, subfamily P, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-040426-790]
Coordinates
chr20:25664625-25665095:+
Coord C1 exon
chr20:25664625-25664787
Coord A exon
chr20:25664788-25664945
Coord C2 exon
chr20:25664946-25665095
Length
158 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
ATTAATCATTAATATCTTAGGTT
3' ss Score
5.26
Exon sequences
Seq C1 exon
CTTTCAGAAAAATACGGAAGCGTTGTAAGCGTTCATCTTTTCGGACAAAGAACTGTTATTCTGAACGGGTACAAACAAGTGAAGGAGGTGTATATACAACAAGGCGACAACGTGGCTGATCGACCTGAGTTACCTATGATTCACGACATAGCCGGAGACAATG
Seq A exon
GTAAGTCTCGTAGCCTCATTTAAACACAGCCTTTTTGGTTTCAGTACAAATTGTAAATTGTTTTATGCACCAGATGATGGTGCATAAAAATATTTAACTGAAAACAATTTTTCCAAAGATAAAAAGTTAATAATTATTATTAATCATTAATATCTTAG
Seq C2 exon
GTTTAGTTGCTCCCAGTGGATATAAATGGAAGCAACAGAGGAGATTTGCACTCTCAACTCTTCGGAACTTTGGTTTGGGGAAGAAAAGTCTGGAGCCGTCCATCAATCTTGAATGTCACTATCTGAATGAGGCTATCTCAAATGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042978:ENSDART00000063100:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGAAGCGTTGTAAGCGTT
R:
CGGCTCCAGACTTTTCTTCCC
Band lengths:
249-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]