MmuINT0045062 @ mm9
Intron Retention
Gene
ENSMUSG00000052520 | Cyp2j5
Description
cytochrome P450, family 2, subfamily j, polypeptide 5 [Source:MGI Symbol;Acc:MGI:1270149]
Coordinates
chr4:96326172-96329965:-
Coord C1 exon
chr4:96329803-96329965
Coord A exon
chr4:96326322-96329802
Coord C2 exon
chr4:96326172-96326321
Length
3481 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
ATTGAATTTTCATTTTGTAGGAT
3' ss Score
7.53
Exon sequences
Seq C1 exon
TTTGTGAAGAAATATGGGAATGTATTTAGTCTGGAGTTGGGCCAATCACCAGTGGTGGTTGTATCAGGACTGCCTTTAATCAAAGAAATGTTTACCCACCTGGACCAAAATTTTGTGAATCGCTTTATGACACCGGTTAGAGAACGAATCACAGGTAAAAATG
Seq A exon
GTAAGTTTCTGTCGTGGATAGCCTTGGGGCTAATTATATTTGATGGTAATTCTATTCTCCTGTGAGTGGTTTCGAACAAAGAATGAGTCAGCACTCAGGTGATTTCCTGTAAACCTGCTTCCCACCTTAATTTGTAAAATAAAGGGGAGCTGATGATTGGGCAGATAAAAGGGAAAGTGGAGCAGAAGGTGGGGGAGAGAAGAAGGAGAAAATGGAAGAGGGAGAGGATACAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGCAGAGCAGAAGCACATGGCCTGGAGAAACTGCAAGTTCTAAGGGATCTCATAGAAGGAGAAGATGGTAGTGTAGCCATAGATCTGTCCAATCTAGGCACACAGCATGGATTTATATTAATTGTATTGTGTTTTCATTGCCCTGGCATAATTAGGTTGGAGAGATTTACTGCAACAAGTTTCTTGACCACAGTAATGTTCACTTTATATTTTTTATGGTGTATTACACTTACCTTGTCATCCACAACTGTATAAGAATTGGTAAGAAATTCCATTGTGAAACGTTATCATTTTAAAGGAAGCTGCCTGCATTTCCCGATGGAGAGCCATGTGTTGTTGGCTTCTATGAGGAATTGTAACTAGAAAGGTAATAAACAGGACCACAGAGTGCTGTCTGAAATGCCTTAAATTTGTAAAGTAAAATAGTTGTGTTTAAGGTGTTTTAGTTTAAAGTAGAGCTAGAGAGTCAGTATCAACAGTTTTGTTGTAAGGGTTTACAATGTTGTAAGGGTTTACAATGCTCAAAAATTAAGGTAGATGAAAGAAGAGGTTTTCAACCTCATGTTCAAGATTTCCAGTATTTCAAGATATGGTAAGGAGTGGGTGAGGGAACACCTTCTTAGAGGCAAAGGGGAGGGGAATTGGGTAGGGGGTTCATGGAGGAGAGACAGGGAAAGGGTATAACATTTGAAATGTAAACAAAATGATTAAGAAAAAAAGAAAGTAAACTAGCAAGTTTATATAACCTCTTTCAAGACTATTGTATACTTTTGCCTGCAATAGATGTCTCCTCATAAGCTAGTATTTCCATTTCTTGACGTCTTTTCTAAGTTGTATATATACTTATACTTATATAGATAATTACATGCATGCAAAGTAAGGCATGTGAGAGAACATGTGCATGTATTTTTCATTCTGAGTTTGGTCATCATCTTTAATTACATTTTCCAAAAGCATCAATTTTCCTGACAATCTCATTTTACTTTGCAACTAAAGAATATTCTAGTTTGTATATTTATTGCCTTCTCATCTCCATTAATCTGTTGACACTCCTCTGGGCTGCTTTGCTATCACAAGTACAATAACAATAAACATGGAAATTAATATATATCTATGGTAGGTAGGTATGGTGGTTTGAATGAGAATAGATTGCCTAGGCTCATATATTTGAATTCTTGGACTTCAGTTGGTTGAAAAGTTTGGGAAGGATTAAGAGATATTGCCTTGTTGGAGGAGTGGTGATCACTGGGGACTGGCATTGAGGGCTCTAAAGATATCTCTCTCTGCCTCAGGCTTATGTCTCAAGGTGTCAACTCTTAACCACTGCTCTAGCACTATGCCTGCTTGCCTAATGTCATGTTCCCTGCCATTATAGTCATAGACTCTAACACTCTAAAGATATGAGCTCTTAGTTCAATTCTTTTTTTATATATAAGTTTCTTTACTCTAACTGATTTATCACACCAATAAAGAAAGAATTAATACAGTAGTTATATGGTATTCTATGGGTATATTTCCAGGATTAAAATATATAGGCTATAAAGTAAACCACATTAGCTATTTGGTTTTGTACTTTCAAATCTGTCATTTTTTTCTTCAGTTTTGTGGTGGATACAGGCGTAAAATGTAATTGATAGAGAAAGCGGAAACCATACAAAATGGTCAATTGCTTTAGAATAGCCAGTCTAACTGGAAGAAGTCCATTGAGATATATAAAATTGGCACAGGGCAAATGCTTGCATATAATATAGCTGAATGATGCTTTTATTTCTGAGTTCATTAGAAAAGAAGGTTATTATTTAATTTTTAAATGTATTACAATTTGGTATAAAGAAAAACAAAGAAAATGTATAAATATTGACCAATAGTACCATTGAAAAGGAGAGGAAAGACGGGTAAAAGTTACTGAGGGGCCATGTAGGGTAAGCTTGAAAGGTCTTTCTGTATCTGATGCTAGAAATGGCCTTTTACTTGGATATCAGATGCCACACCGACATTGAAGAATATTGTAAAGCATTCTAGAATTAAAACAAACAAATATATACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGGAGGAGGAGGAGAAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTACAGATCCGCCTTCAAAGGATTGTCTGAGGAGACACCTACATCTTCTCCCTTCTCTTTCTCTGTTCCTTTGTTTCAAATATTCATCTTTCTTGCCTTGTGAAACCATTTATATAAAATTTAAAGTTTTCCTTATGAAGACTTTCTCCTGTAAAGCAAGAGTATATACAGTATATACTCTAGTGTACTCTTGGTGTTTAGTGTAACATAAATCCATAAGTCATTACTTAGAATTATGTGACTTTTGACAAAGTGTGGTCTTGGCATCAGGATCCCCTGAGTTTTGTATACTTATTTGGCAACTAGCTGTTCTAGTTTGATTTCTATTGGTTTGAAAAACACCATGATCAAAAGTATTTGAAAAAAGAAAGGAACATTTTCTGAATATGCATTTGAGTTATAGCTCATTATTGAGATGAGTCAGTGTAGGAACTGAAGCAGATGCTGAAGTGGAAACCATGGAAGAACAGTGCTTACTGCCTAGCACACTGGCTCTTGTTCAGATAGTCTTCTTATACATCTAAGGCCCACGTACCCAGGAGTGGCAGCACCCATGTTGGCCTGGAGGCTAGAACCTCATACATTTATTATCATTCAGTAAAGTTTTTTCACAGACATGAATAAAGGCCAATCTGTTTCACACATTTTTTCCTATTGTAGTTCCCTTTCCATGGGTAACAATAAAATCTAACCAGGACGTCCATCAAAAATATTGGACCTCGGTGGTGCTGACAGCCTCATGGAGTTTCTGTTTTAAATGACATAGAGAAACTTTACTGAAGTTCTTGATGCTCTAAGATGTCAGTAATATTAACCATTATGTCCATTGTTAGGGATTTTTGCATACATCAGTTCTCATGTCTCTAGTATTTGCTGCATGTTTATATAATAGAATCATACTATTGTTATATTGAATTTTCATTTTGTAG
Seq C2 exon
GATTAGTCGTATCTAATGGCCAGACATGGAAGGAGCAAAGGAGGCTTGCCCTGATGGCACTGAGGAACTTTGGATTAGGAAAGAAGAGCTTGGAGGAGCGCATTCAGGAGGAGACCCATCACCTGGTGGAAGCCATAAGAGAGGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052520-Cyp2j5:NM_010007:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.078
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: