DreINT0057170 @ danRer10
Intron Retention
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:597642-599187:-
Coord C1 exon
chr9:599066-599187
Coord A exon
chr9:597754-599065
Coord C2 exon
chr9:597642-597753
Length
1312 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACC
5' ss Score
5.57
3' ss Seq
GTGGGTGGGTGTATTTCCAGGTC
3' ss Score
5.5
Exon sequences
Seq C1 exon
GCATTGATCTGATCGCCACGTTTTATGGCTGTCTGTACGCCGGCTGTGTTCCCGTCACCGTCAGACCCCCACACCCGCAGAACCTGACCACAACCCTGCCTACCGTCAAGATGATTGTTGAG
Seq A exon
GTGACCCCAAACACACTTACTCACACAATCTGGAGGAATAAATACTGCTGTGGAGAAACTATCAAGAGCAGTTTTAAAAATATATCATATCGTATATCATATCAAATATTCAATAATTTCACATATCATATCACATATATCAAATATCATATATCATAACAAATCAAATACAAAATCATATCACATATATGAAATATCATATATCATATATCATACATCATATCATATATCATATCAAATATTAAATTATATCTCATATATAAAATATCATATCATATATCATATCAAATCAAATATATAATCATATCACATATCATATCAAATATTATATATCATATATCATACATCATATCATATATCATATCAAATATTAAATCATATCACATATATAAAATATAATATCATATCATATCAAATCTAATATTAAATCATACCACATATCATGTCACATATCATATGTCATACATCACACATCATATCATATATTTTATCAAATATTAAATCATATCACATATGTAAAATATCATATATCATTTCAAATATTAAATAATTTAAAATATATCAAATATCATACATCATATCATATATCATATCAAATATTAAATCATATCACATATCATATCAAATATCATACATTATATCAAATATCATATATCATACATCATATATATCATATCAAATATTAAATCATATCACGTATCATATAAAATATCATATATCAAATCAAATAATAAATCATATTACAAATCGAATCATATATCATATCAAATATGAAATCATTTCACATATCATCTCAAATATCATACATCATACATTATATCATATATCATATCATCAAATATTAAATCATATCATATATCATATCATATATAAGTTCCAACATCATATCACATATAATATCATGTTATATCAAATATTGTACCATATATGAAATCAAATACATCTAATATCAAATAACGTATCATATGTCAAATCATATCAAATATTATATAATATCATATATCATACCTCATATATCAAATATATCATATGACATATCATATAAAAAATTATAATATTCTGCGTTTCTCTGGCTTTAAATATTCATTCATTCATTCATTAATTTTCCTCTGGCTTAGTCCAGGGTTGCCACAGTGTAATGAACCGCCAACTATTCCAGCATAGATTTTACGCAACAGATGCTCCTTCATCATCCGCTGGATTTTATTCTGTCTGTACACTTTGTTTTGTGACCACTGTATGTTTTGATCTCTAACCGACATTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTGGGTGTATTTCCAG
Seq C2 exon
GTCAGTAAGTCTGTGTGTATTCTGACCACTCAAGCAATAATGAAGCTACTGAAATCCAAAGAGGCGGCGGCGGCTGTGGACATTAAAGCATGGCCGTTGATACTGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058:ENSDART00000115030:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGATCTGATCGCCACGT
R:
CTGTGTCCAGTATCAACGGCC
Band lengths:
234-1546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]