MmuINT0049550 @ mm10
Intron Retention
Gene
ENSMUSG00000020231 | Dip2a
Description
disco interacting protein 2 homolog A [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:76276329-76276705:-
Coord C1 exon
chr10:76276584-76276705
Coord A exon
chr10:76276441-76276583
Coord C2 exon
chr10:76276329-76276440
Length
143 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGC
5' ss Score
9.12
3' ss Seq
CTTGCTTCCATGTGATATAGGTC
3' ss Score
7.92
Exon sequences
Seq C1 exon
GGGTGGATCTTATTGCTGCATTCTATGGCTGCCTGTACTGTGGCTGTGTGCCTGTCACTGTGCGACCCCCACACCCCCAGAACCTTGGCACAACATTGCCCACTGTGAAGATGATTGTAGAG
Seq A exon
GTATGCTCACCCTCCTGGCAGGCCATGCCTGTCCTCTGGGGTGGGAAGTCCTGGTGCTTATCACGAACGGTCTCTGCAGGGTTGTATGGAGATGATGGGCTAGCCTCACTGCTTACTCCGGCTCTTGCTTCCATGTGATATAG
Seq C2 exon
GTCAGCAAATCTGCGTGTGTCCTCAGCACACAGGCCATCACACGGCTGCTCAAGTCCAAAGAGGCAGCTGCCGCTGTAGATGTCAGGACCTGGCCAACCATCCTAGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231:ENSMUST00000160048:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGGATCTTATTGCTGCAT
R:
CTGTATCTAGGATGGTTGGCC
Band lengths:
234-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types