HsaINT0048090 @ hg19
Intron Retention
Gene
ENSG00000160305 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:17217]
Coordinates
chr21:47974488-47974846:+
Coord C1 exon
chr21:47974488-47974609
Coord A exon
chr21:47974610-47974734
Coord C2 exon
chr21:47974735-47974846
Length
125 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
3' ss Seq
CTTGGCCCCTCGCCATGCAGGTC
3' ss Score
9.91
Exon sequences
Seq C1 exon
GGGTGGACCTCATTGCCGCGTTCTATGGCTGCTTGTACTGTGGCTGCGTGCCTGTCACCGTGCGGCCCCCGCACCCTCAGAACCTCGGCACCACACTGCCCACCGTCAAGATGATCGTGGAG
Seq A exon
GTGCGCCTACCTGGCCCGCGGGTCAGAGTCTGTGAGTGGGAGGCTGCAAGGCTGCCCTCCGCTGCCCCCTTTTCTGGGCAGCTTGAGAGGCCCCGCCCACCCACCCTTGGCCCCTCGCCATGCAG
Seq C2 exon
GTCAGCAAGTCTGCATGCGTCCTCACCACGCAGGCTGTCACACGGCTGCTCAGGTCCAAGGAGGCTGCTGCTGCCGTGGACATCAGGACCTGGCCCACCATCCTAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305-DIP2A:NM_001146114:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(22.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGGACCTCATTGCCG
R:
CTGTGTCTAGGATGGTGGGCC
Band lengths:
234-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)