RnoINT0047715 @ rn6
Intron Retention
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13114712-13115086:+
Coord C1 exon
chr20:13114712-13114833
Coord A exon
chr20:13114834-13114974
Coord C2 exon
chr20:13114975-13115086
Length
141 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGC
5' ss Score
9.12
3' ss Seq
TCTTGCTCCATGTGATATAGGTC
3' ss Score
6.82
Exon sequences
Seq C1 exon
GGGTGGATCTTATTGCTGCGTTCTATGGCTGCCTGTACTGTGGCTGTGTGCCCGTCACTGTGCGACCCCCACACCCCCAGAACCTAGGCACCACACTGCCCACTGTGAAGATGATTGTCGAG
Seq A exon
GTATGCTCGCCCTCCCGGCAGGCCATGCATGTCCTCTGGGGCGGGGAGGCCTGGTGCCTGTCATGCACCGTCTCTGCAGGGTTGTACGGAGATAGAGGCCAGCCTTACAGCTTACTTGGGCTCTTGCTCCATGTGATATAG
Seq C2 exon
GTCAGCAAATCTGCATGTGTCCTTAGCACACAGGCCATTACACGGCTGCTCAAGTCCAAAGAAGCAGCTGCGGCTGTAGATGTCAGGACCTGGCCAACCATCCTAGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212:ENSRNOT00000066017:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGGATCTTATTGCTGCGT
R:
CTGTATCTAGGATGGTTGGCC
Band lengths:
234-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]