DreINT0057983 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34420606-34421476:-
Coord C1 exon
chr11:34421385-34421476
Coord A exon
chr11:34420761-34421384
Coord C2 exon
chr11:34420606-34420760
Length
624 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
GCACTCTCACATACTTTTAGTGT
3' ss Score
6.16
Exon sequences
Seq C1 exon
GCTATATAACCAAATGCATTCAGTTGTACGAGACCACTGTAGTCAGACACGGTCTAATGTTGGTGGGACCATCAGGCTCTGGGAAAACTAGG
Seq A exon
GTAAGCTTCCCTAATGCATAAACCTTCAAAACAAAAATAAATATTTGATTTTGTACTTTTTTACAACTATAAATATACAGTTCAAGTAAGAATTATTATCCCTCCTGATTATTTTTCCCTAAGTTCTGTTTAACAGGAAGGTTTTTTCAACACATTTTTAAACATAATAGTTTTAATAACTCATTTCTTATAATTGATTTCTTTTATCTTTGCCATGATGACAGTAAATAATATTTTACTAGATATTTTTTAAGATGTTAGTACTCTGCTTAAAGTGACAATTAAAGGCTTAACCAGGTTAATTAGGCAAGTTAGGGTAATGAGGCAAGTCATTGCATAACAATGGTTTGTTCTGTAGACAATCAGAAAAAATATTGCTTAAAGGGGCTACTAGTATTGACCTTAAAATAGTTTTTAACAAATTCAAAACTGCTTTTATTCTAGCCAAAAATAAAACAAATAAGACTTTATCCAGAAGAAAAAATATTATAGGAAATACTGTGAAAAGTTCCTTGCTCTCTTAAACATACTTTGGGAAATATTTAAAAAAGAAACAAAAAACTCACAGGAAGGCTAATAGTTTTGAATTCAACTATAAATATATGCACTCTCACATACTTTTAG
Seq C2 exon
TGTTATGAAGTGCTGGCAGCAGCCATGACGGCTCTGAAAGGCCAGCCCTCAGTTAGCGGAGGAGAATATGAGGCTGTACAGACCTATGTGCTTAATCCAAAGTCCATCACCATGGGGCAGCTTTACGGAGAATTCGACCAGCTTACTCACGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(8.8=40.6)
A:
NA
C2:
PF077289=AAA_5=FE(34.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATATAACCAAATGCATTCAGTTG
R:
CATTCGTGAGTAAGCTGGTCGA
Band lengths:
247-871
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]