RnoINT0048588 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7374543-7374972:-
Coord C1 exon
chr16:7374881-7374972
Coord A exon
chr16:7374698-7374880
Coord C2 exon
chr16:7374543-7374697
Length
183 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGC
5' ss Score
6.12
3' ss Seq
TTCTGGTGGTGATTCCCCAGTGT
3' ss Score
4.17
Exon sequences
Seq C1 exon
GCTTCCTGATCAAGTGCATCCAGCTGTACGAGACCACAGTGGTACGGCACGGCCTCATGCTTGTTGGACCCACCGGCTCTGGCAAAAGTAAT
Seq A exon
GTAAGCAGAGCCAAGCATGGCCGGGGTTGGGCTTGGGAGGCATGCGTCTCCATCAAGGGCATCAGCTCCACCTGTACTCCTCTGATGTCGGGACTGCCTTCCCCACTTCCTGTAGTCCCCCAGCCCACTGCATTCCTGCTCTCTGAGAACCAGGAGAGTCACTTTCTGGTGGTGATTCCCCAG
Seq C2 exon
TGTTACAGAATCCTGGCAGCTGCCATGACATCGCTGAAAGGGAAGCCATCCATTAGTGGTGGCGTGTACGAAGCTGTCAACTACTACGTGCTCAACCCCAAGTCCATCACAATGGGTCAGCTGTATGGGGAGTTTGACCTGCTCACCCATGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(8.8=41.9)
A:
NA
C2:
PF077289=AAA_5=FE(34.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGATCAAGTGCATCCAGC
R:
CTCATGGGTGAGCAGGTCAAA
Band lengths:
242-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]