GgaINT0019479 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2895150-2895900:+
Coord C1 exon
chr12:2895150-2895241
Coord A exon
chr12:2895242-2895745
Coord C2 exon
chr12:2895746-2895900
Length
504 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTCCTCTCCTACTTCTGCAGTGT
3' ss Score
8.62
Exon sequences
Seq C1 exon
GTTTTGTGACTAAGTGCATCCAGCTGTATGAAACCACTGTGGTTCGGCACGGCCTCATGTTAGTGGGGCCAACAGGCTCTGGGAAGACGAAG
Seq A exon
GTAAGGTTGAAACACTACCTTGGGCCCAGCAAACTGTTGCTCACCTAGTAATGCAGAGGGTTAAACTTCACAGAAGGCTCACACTGCAGTGTTTCCAGCCTCTCTCAGATAGAACCCAGGAGACAAAGGTGTTTTCATGCTGCCTTCTAGTACTGAGTCGTACCCCTGGGGAAGTACAATAGCAGCTTGCCCTTTGGAGTTGGGAGGCTGAGCTGAGGCTTATTGGCACCGCTGCAGATTTCTAAGGCTGAGACGTACTTTGAGCCTGAACATCTGTACTCAGCAGCATGGGGCACCTCAGGACACTTGTTCCAAAGGAGATGAAAGTTCCTCCCCATGCTTCTAAAATCCTCTGTTTCTCTGAATACAGCTAGGCATCTTCTTGCACATTGTCTTTTCCCGTGTCTCCTTTCTCACTGCCCTTTAAATGCAGTTGCTGTGAGCACATGGCTTTGTTGTTATGGAGCCACGGCCATTTATTCCCTTCCTCTCCTACTTCTGCAG
Seq C2 exon
TGTTATGAAGTCCTGGCAGCTGCAATGACGTCACTGCAAGGTCAGCCTGCAGCCAGTGGTGGGAATTACGAACCAGTCAGCTACTTTGTACTGAATCCCAAATCCATCACAATGGGCCAGCTTTATGGAGAGTTTAACTTATTAACGCATGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(8.8=41.9)
A:
NA
C2:
PF077289=AAA_5=FE(34.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGTGACTAAGTGCATCCAGCT
R:
CACTCATGCGTTAATAAGTTAAACTC
Band lengths:
246-750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]