MmuINT0050520 @ mm10
Intron Retention
Gene
ENSMUSG00000019027 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:31290421-31290854:-
Coord C1 exon
chr14:31290763-31290854
Coord A exon
chr14:31290576-31290762
Coord C2 exon
chr14:31290421-31290575
Length
187 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGC
5' ss Score
6.12
3' ss Seq
TTCTGGTGGTGACTCCCCAGTGT
3' ss Score
3.73
Exon sequences
Seq C1 exon
GCTTCCTGATCAAGTGCATCCAGCTGTATGAGACCACAGTGGTACGGCACGGCCTCATGCTTGTTGGGCCCACAGGCTCTGGCAAGAGTAAT
Seq A exon
GTAAGCAGAGCCAAGCATGGCTAGGGTTGGGGGCAGAGGGGACATGCATCTCCAACAAGGGCATCAGCCTGAACCTGTACCCCTCTGGCGTCTGGGCTGCCTTCCCCACTTCCTGTAGTCCCCCAACCCACTGCATCCCTGCTCTCTGAGAAGCCAGGAGGGTCACTTTCTGGTGGTGACTCCCCAG
Seq C2 exon
TGTTACAGAGTCCTGGCAGCCGCCATGACATTGCTGAAAGGGAAGCCATCCATCAGTGGTGGCGTGTATGAAGCTGTCAACTACTACGTGCTCAACCCCAAGTCCATCACGATGGGCCAGCTGTATGGGGAGTTTGACCTGCTCACCCATGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027:ENSMUST00000048603:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(8.8=41.9)
A:
NA
C2:
PF077289=AAA_5=FE(34.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGATCAAGTGCATCCAGC
R:
CTCATGGGTGAGCAGGTCAAA
Band lengths:
242-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types