DreINT0058122 @ danRer10
Intron Retention
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9374938-9376769:+
Coord C1 exon
chr16:9374938-9375169
Coord A exon
chr16:9375170-9376442
Coord C2 exon
chr16:9376443-9376769
Length
1273 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GTTACCTTGTGTTTTCTCAGGTG
3' ss Score
9.59
Exon sequences
Seq C1 exon
GAGATCACTCGTGCTAACAAGGGGTGGGCACTGGACCGTATGGTTCTGTGTAATGAAGTTACAAGATGGATGAAGGATGACATCACGCAGCCTCCTGCAGAAGGGGTATACGTCTATGGCCTATACCTTGAAGGGGCTGGCTGGGACCGCAGGAACTGCAAACTCATTGATTCCAAACCAAAAGTGCTCTTTGAGATGATGCCTGTGATCAGGATGTACGCTGAGAACAATG
Seq A exon
GTGAGTTTTTTATTTTATTTTATTTTTTACACTTGAAATTAATCAGCTCTAATTGCAACAAATATTTAATAAAGCAGGAAATTAAACTGTCATATAAATACATTAGAGAAATTCCATTTTTTATTATAAGAGACAGTAGCTTAAATTAAAGATTTTAAGTCAAACTGTATGAAAATGTATGAATAAATGCATATTACATGTAGGAGTGGGACAGAATATTGATATGTTGATTTATTATGATATTTCCACTACGATACATTATTGGTACTCAATGCTTTATACACCAAACCTAGATATTTTTTAAATATGGAAGTCGTCTGTGTCTTTCAACATCCCAAATCTCCCAGAAGCTTCCATGAGTTTCTCCCTCACAGACTCACATTCACTTTGCTAGTTACATTGCATCTACATGCCAACTAATTCTCATTAAATGATAAGTAGACATTTTTAGGTTGGGGTAAGGGTTGGGGTTAGGGTTAGTGTAAATTGTTAAGTTTCTTATAGTCGGTTAAATGTCTGTTGAAGGAGCCGTATCAACAGATATTAAGCACACAGTCTACTAACACTCAAATGGACCATCAAAATAAAGTGTTACCAACATTTCATTTGAATATTCATATTTATAACAAAACGGAGCCTATAACATTACTGCCTCATTTCATTTTCATTGAAAATACGACACATGCCCTCTCTTGAATCAGTTTTAATAACCAAAAATGGCCATTATAAAAGCATAACGTACAATAAGTTCATACATTATAGGGAAAAAAAAGCAAACAATCAGAAAATCAGTGTCTGCGGTTACATTTATTATTAAATTACCTAAAATATCAAAATACGTTACCTGAGAACAAGTTCAACAGACTCAAAGTCGGGGAATATGTTATTAGATATAAACAACAAGATAATGTAAATATCACGTTTAACAAATATAGTGAGATTGGATCCAGTGGTAGATCCTTGATGAACAATCCTACGAGCACAGCTCTCATCTGGGTATATATGCTGCAGTGCATGCCAGAGTGTGTGTGTGTGTGTGTGGTCATGTGATGTGCATTATCAGTGTAGTGGAGTAAAAGTACCAATACAGCACTAAAATGTACTCAGGAGAAAGTAAAAGTACACATTTTTAAAACTACTTAGTACATTACAATTTCCGAGAAAAAGTACTCAGTTACAGTGGTTTGAGTATTTGTAATTTGTAACCTTAAACCACTGATTATACTACATTCAGTATGGGTACCAACCCAATTGTTACCTTGTGTTTTCTCAG
Seq C2 exon
GTGTGAAAGATGCTCGCTTGTATTCAAGTCCAATATATAAAAAGCCTGTTCGAACAGACCTGAACTACATTGCAGCTGTTGATTTGAGAACCAGTCATCCTCCAGAATATTGGATCCTGAGAGGTGTGGCCCTCCTTTGTGACGTCAAGTAATGATCTTTTGAAATGTGATATACTAATGTAAATGTCCGCTGATGTCTTTCTGGTCACTTTTTACTTAAGCTGAAGCATCCCAGTGGTAACCATAAAGACAAAACACATTAAAACACTATTACAAACAAAATTCAATGATGTCAGTTGACTATCTAATTTGACATCTAACATTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373:ENSDART00000149818:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(6.8=92.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTATACCTTGAAGGGGCT
R:
TACCACTGGGATGCTTCAGCT
Band lengths:
355-1628
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]