GgaINT0093218 @ galGal3
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78614731-78616795:+
Coord C1 exon
chr2:78614731-78614962
Coord A exon
chr2:78614963-78616643
Coord C2 exon
chr2:78616644-78616795
Length
1681 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CATATTTTCTATCATCTCAGCTT
3' ss Score
5.93
Exon sequences
Seq C1 exon
GAAATAACAAGGGCTAACAAAGGATGGGCTCTGGACAGTGTAGTACTGTGCAATGAGGTCACTAAATGGATGAAGGATGATATCATAAGCCCTCCTGTGGAAGGTGTCTACGTGTATGGGCTGTATTTGGAAGGAGCTAGCTGGGACAGAAGAAACATGAGACTGACTGAATCTAAGCCCAAGGTGCTCTTCGAGATGATGCCAGTTATAAGGATATATGCAGAGAATAACA
Seq A exon
GTAAGTAGTTGTACTGTAAAATACATTAATTTGATAGACTTCATTGTCACCCTTTTATTTCAATGGCAAGAAAGACTCTTAGGCTTCAGGAATTTCATCAGGCTGTATCCTATTCATGTAAACATACTGAATCTTTTTCAACAAGGGAGACTAATTAGTCTTCCACAAAAAACAAGCTATTGGCATTCCTTGATAATTAATAATGGGTACTTCTTGCTCTAATATTAAGATTAATTGTGTTAAGAACTTCTAAAACATATTACAGATGAACTGTTCTTTGCCTCATGACAAACATGCTTGCCTTCAGACTTCCATTGTGACTAAAAGTCTTTATTCCCAGTAGAAATTTATAATTGTAACATTAATGTACATGCTAGTGGTGCTATTAATATACAACTTTGGAGATACTGTTGCTTACTTTTCTCAGAGTATATGGGTATTGTGTGGTGCTGGAGTCAGTTAGTCTATTTTCTCACTAATATTTTGAAATGCTTGTTAAACATTTGATATGATGGCTTATAGATCAGAAATCTGGATATTTGCAGAATGCAGATCCTAGATTGAGAAAATGTTTGAATCAAAATTTATACGTACAAACTCTTTAACCTCTGTAACCTCAACACAAGTAACCTTTCCCATACACTAAAAGCCAATGTAACGTACAAGTTTTTCATATACATAACTATATGTGTACTCAACATAGATATATATATATATAAAGTGTATCATACATTTAAAGTATTTATAGATAATGTATTATATGTGTATTGTTTATATATAAAATTACACTTTTTTTTTCTCCTGGACTGGGCTATGCTGAGTTAACACAGACAAGCAGCAGTGGAGGGATGTGATGAAATATCACACATTTTGGTCTTTGAGGCAGAAAAGGGCTGTAAGAGCTGAAAGGAAATTAGGAGGCCAAAAGACAACAAAAAAATTGTTTTGTGGAAATGTATGATTTAGATTAATGTTTGTTTTTGTGGTATGTGTGTGTAAAATAGGAAGGGCCATTGAAGAGAAATGTGCAACAGGATAGGAATACCCAATACTGAGTGTAAAATGAGAAACTTGTGTTGAAAAGTGTTCCATCTCCAGAAGCAGAGCCTGCTTACATGATATTTTGCCAGGGTTTTGTGTAGGTAATATTCTATGAGATGTAATCACTGTGAAAGCAGCCAATACACCAAATAATGAACACTGAAATATTAAGCGAGACTAGAGTATTGTTCTGATTCCAAAGTGAAGAAGTCAGTGATTTATAGTTTGGAATATTAAATGCATTTCAAAACAGATTGTTCACTGTTTTTCCATATATTTTTTTGTTTTGTTTTTGACAAAATAATAATATATTATTAATACCTAATGTTCAATGGGCAGGTTGAACTAGTAATTGTGCTTATCTGGCTAGAGTGTCCATTTACATTTCTTGCTATATCCTGTTTCTGGTGGCTGACATTAAATCCTAAATCTCCCAGAATTTCAAGGATTATGTAGCCTTCATCAGCAATAGCACGGTGGTGAACAGTGCAAAAATCAAGTAAAAATTTTTTCTTTGGTGGTAGAGAAATGTGTGAGATTGAACTTTGATTCAGTTTTGTATTTCCTTGTGCCCAGTCCACTAAAGTCCTGTTTTTATAACCCAGTTTAATTTTCTTCTACATATTTTCTATCATCTCAG
Seq C2 exon
CTTCAAAAGATCCACGTCTATATTCGTGTCCAGTCTACAAGAAGGCTATTCGAACAGATGTGAATTACATTGCTGCTGTGGATCTTAGGACTCTTCAGCCTCCAGAGCACTGGGTACTGCGTGGGGTAGCACTTCTCTGTGATGTCAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021222:80
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(6.8=92.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGATGGGCTCTGGACAGT
R:
TCACAGAGAAGTGCTACCCCA
Band lengths:
356-2037
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]