DreINT0058209 @ danRer10
Intron Retention
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21338659-21339069:+
Coord C1 exon
chr1:21338659-21338755
Coord A exon
chr1:21338756-21338855
Coord C2 exon
chr1:21338856-21339069
Length
100 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
3' ss Seq
CCCTTCTCTCGATGGCTTAGGTT
3' ss Score
8.1
Exon sequences
Seq C1 exon
GGATTTTGGATGTTTTTCAAAATAATAATGCACTTCTTGAACGGATACAGAAATGCCTGGAGGCTTACCTAGAATCTAAGAGAGTTATTTTCCCAAG
Seq A exon
GTGCCTGCACACACTCATGCACTCGTTGCACTTTCTCATCAGAATGCTGATTTCTGTTGATGCTGTGTCATGACTTTACTCCCTTCTCTCGATGGCTTAG
Seq C2 exon
GTTCTACTTTCTATCTAATGATGAACTGTTGGAGATTTTGGCTCAGACACGGAACCCTCAGGCTGTGCAGCCTCATCTCAGGAAGTGTTTTGATGCGATATCCCAGTTGGAGTTTGCCACGCTTACACCTACGACACCTGAAGGGGATGACACTGTCGAGAAAATACAGTATACTAATGACATCTTATCCATGGTATCTCCAGAGGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606:ENSDART00000141317:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(7.5=100)
A:
NA
C2:
PF083938=DHC_N2=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATACAGAAATGCCTGGAGG
R:
TGGAGATACCATGGATAAGATGTCA
Band lengths:
258-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]