HsaINT1011526 @ hg38
Intron Retention
Gene
ENSG00000115423 | DNAH6
Description
dynein axonemal heavy chain 6 [Source:HGNC Symbol;Acc:HGNC:2951]
Coordinates
chr2:84616886-84619904:+
Coord C1 exon
chr2:84616886-84616982
Coord A exon
chr2:84616983-84619684
Coord C2 exon
chr2:84619685-84619904
Length
2702 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
AAGGATGTTCTTTAATCCAGGTT
3' ss Score
5.4
Exon sequences
Seq C1 exon
GACTTCTGGAAACTTTTCAAAACAATAATGCATTACTTGACCAAATTCAGAAGTGCCTAGAGGCATACTTAGAATCAAAAAGAGTTATCTTTCCAAG
Seq A exon
GTAAGTTTATAAAGCAACCTAAGATATTTTTTAGTAGTTATGACTGTCAATCAAGTTGAGGTTATAATTATAACCTCAAAGCATGAAGGAACTAGAGAGAGAAACAAAAAAGATCTACGATAATGAAAATCCAACTAGTTATCGTAATTGAGGAGTATAAGTCTCAAGGATAAAATACAATATTCAATAAATAGTTAAGTGGGTAAGTAAGATGCTGAAACAATTTTTTTTATTTTAATTTTTGTCAGTATATTGTAGGTGTGTTATGGGGTACATAACATGTTTTGACATAGGCGTGTAATGCATAATAATCACATCATGTAAAATGGGGTATCCATCCCCTCAAGCATTTATCCTTTGTGTTACAAACAATCCAGTTATACTCTTTTAGTTATTTTTAAATGCACAATTAAATTATTACTATTAAATTATCATTATTATTGATTATTAAATTAAATTATTATTGACTATAGTCACCCTGTTGTACTATCAAATACTAAGTCTTATTCATTCTTCCTATTTTTTGTACCCATTAAATATCCCCACCTCCCCAGCCCCAACCCTTCCACTACCCTTCCCAGCCTCTGGTAACCATCCTTCTCCTCTCTATCTCCATGAGTTCAATTGTTTTGATTTTTAGATCCCACAAATTGAAATGATTCTTGATCACCCCATTGTTTTACTGTTTTATTGTTGAATGAATATGTGTGCCTGTGTGTGTGTGTATATGTGCACAAACATGTGTGTAAAAAGTTAAGAGAGACCGGTGTTGCCTGAGCAATTTTCTTTAGATTAATTGGTGGGGATGCATGTTAAGCTCTCCAAGATGCCTAGTCTTGAGGAGAGTGAACCCCACCCTTTCTCGTGGGCATAGCGAGCACCTTTAGTACATCTCTCTACCAAAAAATCTTCCTATCTCTAGCTGTCCAGCCTCTCCAGCTTTAACACTTTCATACCCTCAAGTGAGTGAGGACTCTAGAGTCTTCACCTATCTCCCCATGAGTCAGCCCCAGGTGACCTGACATCTCATTTTGAAATGTGACAACTCTAGTCCTAGAACTTCAGCCAGAACTGAAACTGAAATTTTAACATCTAGTTATATTACTTGGGAAAGATTTGGTCAAAAACACAGAAGCCACTCTAAGTGTTTAGAGCAAGTTTCATGCAGGGAATTAGAAGTTTTCACTGGTGCTAGAGGCAGAAGAAGGGAAGAACTGAGGACCACTTTGAGGAAATCTGGAAATACAGGCAGAGGTCTCAGGGAAGTGCCACCAAAGTCTCGGCTTCCTGCAACAAGAAAGGGAGGGATTGTCAGGAGGACACCTGAAAACCAAGGATAAAATCCCACCAGCTTCAGTCATCCATGCTCAAGTTGGGGAATAATGGCTTTGCTTCCTCCCACCTTCTCAGTCACATAGAAGAGCATCTCATAGGCAGCATTTAATCTGAAACCTTACTGGAAAGAGATTCTAGAAATGTCATTCCAGCTTTTCCCTGATGCAGGGATATTGCTAAGTTGACAATCAACAATCTAGAGCATTCACTAAATGCTGGTTTATACATTTAGTCCTCCAGAACATGAGAGAGTTGGGGATAGGAACAGCAGTAAAAAGGACCCGTGATTGGAAAAAAAAAAAAAAGTTTGAAAATCACTGTCTTAAATGTTAATAGTTAATTGCTGTAACCTATTCTAGTATGAACTAGGATAGTCAGTTGGGATAATAAATCAAATTCCTTTTGAGTGATTTGGAGAGATTAAACATAATACAAGAACTATATTACATGAAGTCTGGCATTTAGAATATTTTTGGTTATCTAGAGCAGGGACAAACAATTTTTTTTCATAAAAGGTCACATAGTAGATACTCAAGGCTTTGTAGGCTTTACATTCTCTGTAGTCAGGTCCGCTATTGGAACACAAAGGGAGCCACAGACAGTACGTCTGCATGGCTGTGTGACAATGAAACGTTATTTACAAAAACAGGTGGTGGGCCAGATTTGGCCTGGGGCTGTAACTTGCCAACCCCAATCTATAGCAAAATAATCTTCTTTAAGTTTACAATTTCCTTTACCTATCTTGCTGGTAATAATATGGAATATATATAAATGTTTTATTTCTACATAGGTATAGCCTCACATGGTTGGAAATGGTGTGCTGGCAAAATTACATTATGCCAATTTTCACAGTAGCACATGCTGCAGGGAATAGCAAATGCCTTTGGGTTAAGAGAATGGCCCAGTACACATTCACACAACCCAATAAGGTTCTCCTGCAACCACCCATCCATCTGTTAACTCTTCAGCAAATAATGTATTGAATACCAGGTATGTGTGACATACTAGGCTACATTTTAGGGAAAACAAATAATACATCTTCACTCTGGAGGCTTAAAGCCAGGTAAGACAGATATGTGAACACATCAGTTTCTAGCATTTTTACAATTTTATGAACAATATCTATCTTTTATGTACTAGACACTAATTCTAGGTGTGCATCATCACACCTAAATGCGTCATCACTAATTTTCACAGAAATCATGTTTAGAGATATGTGGCTTCCCCAGAAACCCATGACCAGTATAATTGGAGGTCCAGGAAATTGGTGGACAGGGAAGAGATGTGGCTAAGGAATTTATCTTTTATGTCTGTCTAAGACTTTACTTCCATTTCAAGTTATATTTTAAGGATGTTCTTTAATCCAG
Seq C2 exon
GTTTTACTTCTTGTCAAATGATGAACTTCTGGAGATTTTGGCCCAGACACGAAATCCACAGGCCGTGCAGCCACACTTAAGGAAATGCTTCGACTCCATTTCAAAGCTCGAATTTGCTCTCATGCCTCCTGCCGAAGGAAAGATTCCTGGTATTGATGGAGAACCAGAAAAGGTTTATACTAATGATATTTTAGCAATGCTGTCACCAGAGGGAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423:ENST00000237449:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(7.5=100)
A:
NA
C2:
PF083938=DHC_N2=FE(17.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains