RnoINT0049018 @ rn6
Intron Retention
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101087968-101089222:-
Coord C1 exon
chr4:101089126-101089222
Coord A exon
chr4:101088188-101089125
Coord C2 exon
chr4:101087968-101088187
Length
938 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
AAGTGCCCTTACCTTGACAGGTT
3' ss Score
7.83
Exon sequences
Seq C1 exon
GGCTTCTGGAGACTTTTCAAAACAATAATGCATTACTTGACCAAATTCAGAAATGTCTGGAGGCATATTTAGAGTCAAAGAGAGTTATCTTCCCAAG
Seq A exon
GTAAGTTCACAAAAACAGCTTGAGATGTCTTGTTGGAGAGTAGACCAGTTGAGGATGGCGATAACACCCTCCGACAGCAGAGACCTGGAGAGGGGAGGACGATGCCCACGCGTACTTCGTGCTTCAGACTTGGTGCTGGGCAAACACTGAGCTGTCACAGTGGTGGAGGAGGGCAAAGCTCACTCTCTGCTGGAGAGTACAGGGAACCCACAGAACACCATTCCCCCCATCGCCCCATCCTTAGCTCTGCAGCCCCTCCAGCCTTAACGCTTCTATTCCCTGCAGTTAGTGGGGGTCCTAGAGTTTTCACCCCTCTCACCATGCGTCCCTGCAAAGCCTGGCAGCTCACTTTGCAGGGTTAGCATGATCTGGAAGTCTAGAGCTTCAGATAAACCCAAGACCGAAACAGTTGCATTTGTCATGCACACTTGCGTTATTTGGCCCTAAGTTTGGGCAGGAATGGACAAGCTTATTGTTTATCCATTTTGCTTCTAATGATATGAAAACACATAAAAGATGTCTTATTTCTACATAAGTATGGCCATGGTAAGGTCGGAAACTGAATGTTGGCAGCATCATGCTCTGTCACTTTTAAGGGCCCGGCAACCACCCATCTGCCTATGGCCTCTTCAATAGTTAATGTGGCTCAAGGACAAGGAAGGCCAACAGGCAAAGAGGTCAGCATTGTAACAGGACCTCATGTTATTAATGATTCTTAGAAAAATCCTTTCTATTCTAGCTATTGGGCCTGAGTACTTGAGATACATCATCATTACCTTTACAAGAACTTCTTTAGAGACACTCGGCCTGCCCCCAAGCCCAAAACAAATGTGATTAGAGGTCCAGGGCATCAGCCCAGCAGCATCTTGTCTCTTACGACTACCGAAGGCTGAGCATCTGTCCAGTCACGCTCACATTAAGTGCCCTTACCTTGACAG
Seq C2 exon
GTTTTACTTCTTGTCAAATGACGAGCTCCTGGAGATTTTGGCCCAGACCCGAAATCCACAGGCTGTGCAGCCTCATCTAAGGAAATGCTTCGACTCCATTTCAAAGCTCGAGTTTGCTCTCATGCCTCCCACAGAAGGGAAAATACCAGGCATTGACACTGAGCCAGAAAAGGTCTTCACCAATGACATTTTGGCAATGCTCTCACCTGAGGGAGAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581:ENSRNOT00000020894:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(7.5=100)
A:
NA
C2:
PF083938=DHC_N2=FE(17.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCTGGAGACTTTTCAAAACA
R:
GTTCTCCCTCAGGTGAGAGCA
Band lengths:
315-1253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]