DreINT0058344 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10372686-10374750:-
Coord C1 exon
chr6:10374546-10374750
Coord A exon
chr6:10372851-10374545
Coord C2 exon
chr6:10372686-10372850
Length
1695 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
GTGTTTGTGTGTGTCTGCAGTCG
3' ss Score
9.33
Exon sequences
Seq C1 exon
ATGCATTAAAGTGGGGGATAAGGAGTGTTATTTCCATCCGGACTTTCGGCTGATTCTCCACACAAAGCTGGCAAACCCACACTATAAACCTGAGATCCAGGCTCAGACCACCCTCATCAACTTTACTGTTACACGGGACGGGCTGGAGGACCAGCTGTTGGCTGAGGTGGTCAACTTAGAGAGACCAGACCTCGAATATCTGAAG
Seq A exon
GTTTGTGTATCCACAGTTGAAGTCAGAACGAGTAGCCCTCCTGCATGTTTTTTCCCCTCATATCTGTTTAACGGAAAGAATAGCTGATTTCGTTTATCTTTGCCATGATGCATTTTGCTAGATTTCTTTAAGATACTAGTGTTAAGTTTAAAGTGTAATTTAAAGGGCACATAGTTTACCCCTTTTTATGATTTAATATTATTATTATGGTTCTTCTGAGTGTGCCAGTTTATGTTCAGTTCAACACAGTTCAGATTTTTTATTATAATGTGCTCAAAAGTGTCATGTAGGGGGCATTTACACAGTTTGCTGTTTTAGGGGCGTGTTGCTTTATATGAAAATTTGTTTCGGCTTCCCGCCCAGTTTAACAAGGGGGCGGAGCCAAGAGTGTTTTCAACAGACAGGCAGACTGTGAGAAGGAGCAGGAGTGAGAGGATCAGCATTCAGCCGTACATGTACGACTCGGACACAGACCAAGCAGAGAGTACACAATCATTTGTGTCTTTGTATAGGTTTACAGACAACTGTGTGCTAGTTTAAAGTGCCAACTTGACCGAGGCACCGGATGCGCTGCGACAAGGCACACCAGACACTCTCTGTAGCACGGCAGAAACATGAAGTGTCCCGAATCGTCGCGCCACTCATTTTAGAACTCTAAACAACGGTTTCTATTAGGGTAAACACAACTGCGCTTGATGTCGGCGGCTGTCCTCGGCGCCCAGACGCCAACATGAAGCGTCATTGTGTGTACCCTGATAGAAACCTATGTTTAGAGTTTTAAAATGCATGGCGCTGCGTCAGCGTCGCACCACGCAGAGCAGCGCTTCTGGTGTGCGACCTGCAGGCAAGTTTGTTTTTTTATTTCCAATGGAGAGACGCGCAAATGACGCGCATGCACTTTTCCAGCTGCACCTAGTTAAGATCACAGGGAGCTTCTGTGACCTCGAGAAATGCAAACGGCTGAAGTTTAGGGTACCTTATGGTACCTACCTAATGATACAACCAATAATTCCGATTACAGCGATCATGTGGTGAATGTTGATGTTGTGTTGAGCCCAATGAGCCTTACATCTAAAAATAGAGCAAGGATGTGAATCAACAAACTGAGGATATGGGGCTGTCAATCAATATTGGTGGGCGGTGGGACTGCACTGCTACGTCAAGTTACGGTTGGTCTGAAAATCGTTCCAATTGGTCCATCGTTTTTATGTTTTTAAATTGAAAAAAAAAAAGGACTGTATGTGTTTATATCAACCCAATATGACGGTCTATGCACTATACTTACGCACATGTCTGTCCAAATAGCTTGAAAAGTAGATTTTTTACCACTGGTGCCCTTTAAAGGCTTAACTAGGTTAATAAGGCAAGATAGACAAGTTATTGTATAACGATGGTTTGTTCTGTAGACAATTGAAAAAGTATTACTTAAGGGGGCTAATAATATTGACCTTAAAAAAATTAAAAACTGCTTTTATTTCAGCTGATACAATACAAATAAGACTTTCTCCAGAAGAAAAAAAAGCATAGGAAATGCTGTGAAAAATTCCTTGCTCTGTTAAACATAATTTGGGAGATATTTGAAAAAAGAACAGGAGGGTTAATCATCTTGACTTCAACCGTGCATGTTTAATTAGTCCCTGAACATCCTTTTGACTGAACTGCTATTGATCTGTGTGTGTTTGTGTGTGTCTGCAG
Seq C2 exon
TCGGAGTTGACTAAACAGCAGAACATGTTTAAGATTGAGTTAAAGCAGCTTGAGGATGAGTTACTGACTCGTCTCTCTGCGGCGGAAAGTAACTTCCTTGGAGACAACGTTCTGGTGGAGAAACTGGAAAGCACTAAACATACTGCTGCCGAGATCGAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(29.8=100)
A:
NA
C2:
PF127812=AAA_9=PD(22.8=94.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGGGGGATAAGGAGTGTT
R:
TCTCGATCTCGGCAGCAGTAT
Band lengths:
357-2052
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]