BtaINT0050295 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30741462-30742894:+
Coord C1 exon
chr4:30741462-30741666
Coord A exon
chr4:30741667-30742729
Coord C2 exon
chr4:30742730-30742894
Length
1063 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTTTGCTTGGTTTGCATTAGCTG
3' ss Score
4.79
Exon sequences
Seq C1 exon
GTATATCAAGATTGGAGATAAAGAATGTGAATTTAACCACAACTTTCGTCTTATCCTTCACACAAAACTGGTAAATCCTCACTATAAGCCAGAACTGCAGGCTCAGACAACCCTCCTCAATTTCACGGTCACAGAAGATGGTCTGGAAGCCCAGCTGCTGGCAGAGGTTGTCAATATTGAAAGACCAGACTTGGAGAAACTTAAG
Seq A exon
GTAAAAATTATGAAATTATTCCTCAGCACTTATTCAGTACCTTCTTTGCACAAACGATAGTGCCAGACACAGGAGTGTAAGATGGGATGCCTGCTTCCATGATCTTGCAATCTAATTAAGAAAAATGAGAATATATGTGAACAGTTAGGTAGCAACTCAAGATACTTCTGATTAAGGAAGTAGGATTGTGCCGCAGGAGATGGGCTCGTTGTGGGTCTTGTTTGGTGCATGTGACTCTGGCAGGCACAGAGTTGGAATCATGGAAGCAGGGCTGGAGAAGCAGATACATGCCCTAGAAGGTTGGAAAGAACAGAGGGTAGAGAGGGATCTGCCCTGGGCTTCCTCTCCTAAGAGAGCCCCAAACACTGGGCCCTCAGAAGTTTTTAACTCTCAAGTTCTGCCCCCAGGAATTAGCCAATTACTACTTAAATGTTCTTGAGAAGCTGTGACTGTATTCACCCATCTCTGTACTTTTCAGCATGGCAATTGCCCTGTGACCTCAGTTCTCTGACAGATATAAGAAGGGCTGTGATGTTTAGCTTTTATCCTGTTATGAGGATGGAAATAATGCCTTTTCTCTTTAGATGTAAAACAGAAACCAGAAGTTTCTTCCTCTGGGTTCATAATGTCCCATGATTATGATGTATGGTCATGCTCTGGAACCTGGAGTGCAACCAGCTCTTACCATGCCTTCTGAATTTAAAGTTTAAATGCATTGCAAACAAACAATACAAACAAGCAAGAAAATACAAATATTTAAAATTCTGTATTTTAGCAGGTGGTGGAGGAGGCAGAGATGTTTGGCATACAAAAGTGCATTATATTTCTATGAGATGCCAAAATTTCTTATGCAATTATCCCTTGATTATCTCCATCTAGATTTAAAAATAATTTATACCTGACTTTAATTGGGAAAATTTCTGGGCATAGTTAACTATGTGTATTGCTTTTAAAGAATTTTTAAAGATTATGATTACTACAATTGTAATGCTAAGTGTTTTGTTTTATATGAAATGATATGAATTTATTCACTGTCTCTCACCTTTTGCTTGGTTTGCATTAG
Seq C2 exon
CTGGTTCTGACAAAGCACCAAAATGACTTTAAGATAGAGCTGAAGTACCTGGAGGACGACCTCCTTCTGCGTCTCTCTGCAGCAGAAGGGAGCTTTCTAGATGACACCAAACTGGTAGAGAGACTGGAGAGGGCAAAGGCCACTGCAGCCGAGATAGAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:66
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(29.8=100)
A:
NA
C2:
PF127812=AAA_9=PD(22.8=94.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAATTTAACCACAACTTTCGTCT
R:
CTTGCACTCTATCTCGGCTGC
Band lengths:
345-1408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]