DreINT0009169 @ danRer10
Intron Retention
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19404962-19406808:-
Coord C1 exon
chr16:19406604-19406808
Coord A exon
chr16:19405127-19406603
Coord C2 exon
chr16:19404962-19405126
Length
1477 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TTCATCTTTGATTGTTTCAGTTG
3' ss Score
8.34
Exon sequences
Seq C1 exon
GTACATCAGACTGGGTGATAAGGAGTGCGAGTATGACAAAGGTTTTCGTCTTCTTCTACACACTAAGCAAGCAAACCCTCACTTCCCGCCGGAGCTGCAGGCCCAGACCACACTGATCAACTTCACTGTGACACGCTCCGGTCTGGAGGATCAGCTCCTGGGGCAAGTGGTCACACAAGAAAGGCCTGAGCTGGAAATGATGAAG
Seq A exon
GTCAGAGGCTTGTTTGTTCAGTTCAGTTCAGATCAGTTTGTTATGAAAGTTCGGAATAAAAGAGAAAAATTATATACAGAATGCAGATTTATTGAAGTGCTGCTAAGACTGTAATATTTCAACAGGGTTAGGAGTGAGTTTAGCCCTCATTAACTCCTAATTTACAGCTTATTTTGATTGATAATAAAGGTTGTTTGGCATTCTGTCCCAGGAGAGAGCTTTCCAACTCCTGATCTTAAAGCCCTGGGCTCCCTCCTGTTAGCAGGACGAGAGGGGAGTTTGAGCTCATGTAGATCTCAATGAACTCCCCCACACTTGTTAATGGCTAATAATGGATTGTATAGCTATACTACTTACTAGGAGTACGCCTATAGTGCCAATTTGGTATGGTCAAATTACTTATATTGCATGTTTTTGGACTCTGGGAGGAAACTGGGGAGAACTCAGGTTATTTATAGTGAGTTAGGAATCGTCATGTATAAGCTAATGCGGGACCATCATAAGCACGTGGTCCTCTTGAAATTAGTTTATAAATAAACTTCACAAAGAGTTAGTTCACCCAAAAATGAAAATTATTCTCCCTCATGCTGTTCCAATCCCCTGAGACATTAGTTCATCTTCAAAACACAAATTAAGATATTTTAGATGAAATCCAAGAGCTCTCTGGGCTTTCATAGACAGCAAGGGTCATGAGAAGCCCTGAAATATACCAAAAATATTGCTAAAACATTTCATGTAACTTGGTTAAGATGTAATGGTAAAAATTTGGTACTCCAAGAACAGTACCAAAAACAAGCAAAAAACTGTGAATACATCTTTAAACGTATGTTCAATCCAGACAGGTCCCGATGCATATTTAAAACAGCAATTTGATACTTGTGTGTAACATTTTCAGATCACTGTTCATAATAAACACCCTGAAAAGGAAGAGAAAACATCAAAGTCAGAAGTCTCACAACTCTTGGGCGCTGAAATAAAGTAAATTGTGTTCTAAAGATAAACAATTGTTCCTAGGGGATTGGTTGAGTAATTAATGATAGAATTAAAATGTTTGAGTAACTTCCTTTAATAGGGCGACACAGTCACCTCACAGCAAGAAGGTTGCTGGTTAGAGTCCTGGCTGGGTCAGTTGGCCTTTCTGTGTATAGTTTGTACTGGATGTTCTCCACGTGTTTGCGTGGGTTTCCCCCGGGTGCTCCGGTTTCCCCCACACTCCAAAGACATGCGCTATAGGCAAATTGAATAAACTAAATTGGCCATAGTGTATATGTGTGAATGAGTGTATTTGTATGTTTCCCAGTACTGGGTTGCAGCTGGAAGGGCACCCGCTGTGTAAAACATATGCTAGATAAGTTAGTGATACATTCCGCTGTGGCAATCTCTGATGAATAAAGGGATTAAGCCAAAATAAAATTAATAAATTAGTAATCCTTTAATAGTTAGTAAAGTCCTAACACTTCATCTTTGATTGTTTCAG
Seq C2 exon
TTGGAGCTGAGTACTCAGCAGAACTTGTGTCAGATTGAGCTGAAGAGACTTGAGGATGAGCTGTTAAGCAAACTGTCTGCGGCAGAGGGAAACTTCCTGAGAGATACAGCCCTAGTGGAGCAGCTGGAACACACCAAGAACACTGCCAGACACATCCAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282:ENSDART00000138744:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.145
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(29.8=100)
A:
NA
C2:
PF127812=AAA_9=PD(22.8=94.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTGATAAGGAGTGCGAGT
R:
CTGGCAGTGTTCTTGGTGTGT
Band lengths:
343-1820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]