GgaINT0127386 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1123819-1128769:+
Coord C1 exon
chr18:1123819-1124023
Coord A exon
chr18:1124024-1128604
Coord C2 exon
chr18:1128605-1128769
Length
4581 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TATTAATTGCTTATTTGCAGTCA
3' ss Score
5.9
Exon sequences
Seq C1 exon
GTACATTAAGATCGGGGACAAGGAGTGTGAGTTCAGCCCTGCCTTCCGCCTGATCCTGCACACAAAGCTGGCAAACCCTCACTTCCAGCCCGAGCTGCAGGCACAGTGCACCCTCATAAACTTCACCGTCACGCGGGACGGCCTCGAGGAGCAGCTGCTGGCGGCGGTGGTCAATGCGGAACGGCCCGACCTGGAGCAGCTCAAG
Seq A exon
GTGGGCAGGAAAAGATGAAAAATAATATCAATGGTTTAAGACAAATAGCATTTCATGTGTAAAGGCAGAGAGGTTGCTGAGTGCCTCATAAGATCAGGTTTCCCTCGTAGAATCATGGAGTCATTGGAGTTGGAAGGGACCCCTAAGGGTCATTTGATCCAGCTCCCTGCACTGAGCAGGGACACCCACAGCTCCATCACTGCTCAGAGCCCCTCCAGCCTGACCTCGGGTGTCTGCAGGGATGGGGCAGCACCACCTCTGGGCAACCTGTGCCACTGCCTGTAGTGTGAAAAACTTCAATCTACGTCTCCCTTCTTTTTGTTTGAAACCTTTCCCTTTGCCCTATCACAACAGACCCTACAAAAGTGTCTGTCCCCTTCTTTCTCACAGCCTGAAAGACCGCTCTCAGCCCTCCCCACAGCCTTCTCTTCTGCAGCCCCATCTCTCACAGCCTGTCTCAGATGATAAGTGTTGAGGGAGAAGTGTTTTTCTGCTACTTTTTGTTTTCTTGGTATTTTTGGGAGCACTTAAACTGCAATTTCAAGCCTTTTTCTCCAAAAATGTGGGTAGAAAACTCTTTTTCCTACTCCTCCTGTAAATGGAAGCAGGCTCACATTATGACATTTTTCTCCATCTTTCACTCTTACTTTGGAGGTAGGATTAATCTCACTTAATTTTAGGCGTTTGTGGTTCCCACTGTAAATGCTGAGGCTGATAACTAAGTGCTTCTGTTCTGGCTCTTATTCACGCTTGTTTGTAAATGGCCAAAATGTTTTCTCTCTTTTTGCATTTAAATAAATATTGCTTCTGTTTCAATATATCATTTTAAAGAAAAGCCTCGTTGCTAACGGCACACTTAGCGATGTAATGGATATGTATAATGCTGAATATTTACTGAGAGTCAGAATGAATTTAGTGCACACATTCGGTCAGGCCGGGCCACTTCTGTAATCATCTTTTCTTTAATGAGATTCTAAGCTACGTTATCCGTGCAGCCTTAACGACGCGTTTCATTTGAAACGGGCTCATGCACTAACGAGCCAAAAGATGGCATAAAGAATACGTAATAACCGCAATTAATGTGTGAGCTGTGGCTGTGCCGTGGGAGACAGACCATCCCTGCAGCCCGGGGACCGTGGGCAGCTCCTGCTGCTGCCGGGGGCTGTATGGGGTGACCCACAGCACAGAGAGGTTGCTGCACTGCTGGTAATGGCTGCTGTCACGAAGAGAGACTGATTCCACCTCATTGATCGGGCTGGGCAGGGCCTTATCCAGCCTTACCTTGAAGGTCTCCAGGGATGGGGCACCCACCGCATTTCTGAGCAGCATGTTTCAGTGTCTCACCACCCTCACTGAAAAAGACTTCTTCCTGGTATGCAACCTAAATCTCCCCTCTTTAAGTTTGAAACTGTTTCCCCTTGTTCTACCACGGCAGTCCCTGCTAAGGAATCTGTCCCCTTCTTTCCTGTAGCTCCCCTTTAGATACTGGCAACCACTCTCGGATCTCCCCAGACCCTCCTCTTTTCCAGGCTGAACAGCCCCTGCTCTCTCAGCCTGTCATTGTGGAGGAGGTGTTGTATCCCTGGGATCATTTTGTGGCCCTCCTCTGGACATGTTTCAACAGATCCATGTCCCTCCTGTACTGAGGACTCCACATCTGGATGCAGTGCTCCAGGTGAGGCCTCACAGTGCAGAGCAGTGGGGCAGAATCACCTCCCTTGCCCTGCTGGCCATGTTGCTTTGGATACAGCCCAGGATAGGGTTGGCTTTCTGGGCTGTGAGGGCACATTGCTGGCCCAGCTGCCATCCACCAGTACCCTCAAGTCCTTTTTGGCAGGTCTACACTCAATCCTTTCATCCCTCAGCTTGTTTTGGTAGTAGATGTTGCCTCAACCCAGGTGCAGACCCTGCATTTGGATTTGTTAAACCTCATGAAGTTCACCTGGGCCTGTCTGCAGATTGGTGTGGGATTTCCTGGTAAGAATATTTAAGCTTTCTTTTCCCCTCAGTATCCATTCTTCTACCTCTGTTTCATTCACTGACATTAAAAAGCTATTGTCTGAGAGCTGTGGGGAGCTCTCTGAGTACAGGTGTGTACTTCGGGGCTTCCCAAAGGAGAGGACCCTTCTCCACGTGTGCTCTGAGCAGTCACTGCTGTGCTCCAGGTCTTGTTCCGGACCACACAGGTTGCTAACAAGACCTGCACTGGGCCTGTAGCCCAGGTGAGCTGCAGGAACAAGACAGTAAGTGCTTCTAGCATCACCTGCTTCCTGAACCAGTGCTGTTACGTATCAGCTGTGAAATAGCAGATAATGAGCTGCACTGCAGGAATAAGAAATGATGACCTTGCTCCTGCTGAAAGCAGTAGCACGATAGAGCTGCAACAGATGCAGGCTTTTGTGGGAAATACAGCATTGTGTGCCCTTCTGAGGGTGCTTTTCAGACACTGCATGGTGATTACAAGCTATTGGAGCAAAAGTCACATGCAGCCTCATTAAGAGCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTGGTCCTTTTCACCCAGGCCATTCTGTGATTCTGTGACTCCATGACAAAATGGTTCCCACTAGTCTCTGTCTGCTTGGCCACCTTATCGTTGTCTTTGCAAACCCTTTGCCATGGGGACTGTCCTGGTGTGAGCAGCTTCTAGCACTGCAGGCTGAGGGAGACCTTGGGTGCTGGGTACAAATGGGAGCAGCAATTGAGTGAGACTGAGTTTCCATTCCATTTTGAACCCAGGACGGGTGGTGCTCACCTCTGGACCCTAGTGAGTCTGCTGATGTTCTCCCCATCCATTTAGCCCCTTGGCTCCCACTGCTAGTAGAACTGGTGTTGGCCCTCAGTGGGAAAGGCAGAGGTTCTCAGGGGCGAGTAGTATCTATTGATACGTAGGCTTGCTATCCAGGCTGACTTAAGCTTCATAAATATTTTTAAGACAGAGATACAGGATGTGTGTTTGAGATTGGTGGATGGCAACCTAGCACACAGCAGGGGACTGGAACCAGGTGATCCTTAGGGTTCTTTCCAACCCAAACCATTATATGGTTCAGTGATTGAGACAGAGGCTGAAGGTCTTTTCCTCCTTTTCCATTTCCGGCAATTTAATGCTTTCAGAGTGGAAGGGCTGAGTTCTCCTGGTGCTTTCTGTGCTTCCTTCCCTGAATAGTGGCATGTTAGGTATGGAGGATTCCCAGAGCTCTGTTCATATACAGGAATCAAGCAGGAATAATCAATGCTGGGCTGTGGCAATGGTCACTTAGAAGTCCGTTCCCCTGTGAAGGTGGTTAATCCTGCATGTTTTGTGGCTAAGACTTTATTAATTGCTTATTTGCAG
Seq C2 exon
TCAGATCTCACGAAGCAACAGAATGGATTCAAAATCACCCTGAAAACATTAGAGGACAACTTGTTGTCTCGGCTGTCCTCGGCATCTGGGAACTTCCTGGGAGACACAGCATTGGTGGAGAACTTGGAGACTACTAAGCAGACAGCAGCAGAAATTGAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(29.8=100)
A:
NA
C2:
PF127812=AAA_9=PD(22.8=94.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]