BtaINT0050836 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31193116-31195260:+
Coord C1 exon
chr19:31193116-31193320
Coord A exon
chr19:31193321-31195095
Coord C2 exon
chr19:31195096-31195260
Length
1775 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
TCCCTTATGTGATACTGCAGTCA
3' ss Score
4.37
Exon sequences
Seq C1 exon
GTTCATTAAAATCGGAGACAAAGAGTGTGAGTATAACCCCAGGTTCCGGCTCATCCTTCACACCAAGCTGGCCAACCCTCACTACCAACCGGAGCTGCAAGCTCAGGCCACCCTGATCAATTTCACCGTGACCAGGGAAGGCCTGGAGGACCAGCTGCTGGCCGCAGTGGTCAGCATGGAGAGACCCGATCTGGAGCAGCTGAAG
Seq A exon
GTACGTGAGGCGCCCACCCACCAAAGGAGGGAGGAGGAAGATGCTCTGCCACCCGACTCTGCCATGCGCCCTCCTCTGGGTGTGGGGGTGGGGGGGTGTTCCTTCAGAAATTGAGCCATGTGGTTCTTCTGGAGCTCGGAGGAGCGCCCACCCAGCAAGGGAGGGAGGAGGGAGACGCTCTGCCACCCGACTCTGCCGTGCACCCTCCTCTGGGTGTGGGGGTAGGGGTTGTTCCTTCAGAAGTTGAGCCGTGTGGTTCTTCTGGAGCTCAGAGGAGCACCAACACCATGCTCCTAGAACAACATCATGTTCCTGAAACAACACTAGTTCCCTGGAACATCCCTTGGGAAGCAGAAGGTAGAGCAGGCTGAAGACCAGGAAGCGGAAGGCAGCTGGGAGAAACCGCAGTCCCGTCCAAGACACTTTTGAACCTCTCATCACAAGTGTTCATGTGTCTATGTCCAGAACTAAATGGGATTCATTCCTGCAGGGGCAATAGAAATAGATTCAGCCATGTTAGGGGAACATCTCAGCTTGAGCTGCCATCACAAAATACCAGAGGCTGAGTGGCTGGGACAACAGATATTTATTTTGTCACAGTCTGGAAGCTGGAAGACAGTGTTCAGGGTCCAGTTTCTGGCGATACCTCTCTTCCTGGCTTGTAGGTGGCTGCCGTCTCACTGTGCATTCACAGACCTCTTCCTTGTGTCCATACAGAGAGAGCAAGCTCTCTGGTGTCTCTGCTTATACGGGCAATGATCCCACCACAGGGACCCCATCCTCCTGACTTCATTTAACCTTACTTACCTCCTTCTCTAGTTACACCCATCTCCAATACAGTCGTGTGGTGGTAGAGGGGCAGGGGCTTAGGGCTTCAACATATGAATTGGGAGGGAACACAGTTTTGTGTAGAGCGAGTACTGTTCTTTTTCCCATCTCCTTAAATATGACTGGATTGTAATAGCAGGGGAATATTAGAGAGCCAGGGGGCTGATTTAAATTGGGAAGTTCAGAAAAAGATTCTATAAGCAGGTGCATAAGCCTTTGGCATGGAGCACTCCCAGAAGAGTCAAGAGTGAATCCTGGTTATAAAGCCAGATTGAGGCATGTGGGTTTTCTTTAAGCTTTTTACTTTGCATTGAAGTATAACTGATGAGGGCTTCCTTGGTGGCTCAGATGATAAAGAATGTGCCTGCAATGCAGGGAACCCAGGTTCAAACCCTGGGTCAGAAAGATCCCTTAGAGAAAGGAATAGTAACCCACTCCAATATTCTTGCCTGGAGAATCCCATGAACAGAGGAGCCTGGCAGGCTACAGTCCACTGGGTCACCAAGAGTCAGACATGACTGAGCAACCAACACTTTTACTTTTCACAAAGGAGAGCTATTCCTTTTGAGGACAGTAGAGTTATGACAGAGAAGTAAAACTTGACCCCATCCTCTAGCTATTCCCTAAAATAACTTCCATTTAATGACTAGACCATGTCCCAGCATTCTGCTAAGCCTTGCACAGCACTGCTATGTGTAGGGCCAGGTTTAACCCAGCTAAGGTTACTGTGAAAGGGGAATTCAGCCCAAGATCACATGATTAGTAACTGCTGCAGTTGGGGTTCAAGTCCTCAGCTGATTTGACGTGCTCGTGGTCCTGAGCACTCCTCTGTTCCACCTCCAGTTTGCTAAGGGCAGGGGCCCCATAACCCTCTGTCTATTCAGACCTACCGGAGAACAGGATGCTCTGGGCTCCTGTACCTGACTCTCCCTTATGTGATACTGCAG
Seq C2 exon
TCAGAGCTCACAAAGCAGCAGAATGGGTTCAAAATCACCCTCAAAACATTGGAAGACAACCTGCTGTCTCGCCTCTCCTCGGCCTCCGGGAACTTCCTGGGAGAAACGGCCCTGGTGGAGAACCTTGAGATCACCAAGCAGACTGCCGCGGAAGTTGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:67
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(29.8=100)
A:
NA
C2:
PF127812=AAA_9=PD(22.8=94.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTATAACCCCAGGTTCCGG
R:
CTTTTTCTCAACTTCCGCGGC
Band lengths:
343-2118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development