HsaINT0050093 @ hg19
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11784526-11787067:+
Coord C1 exon
chr17:11784526-11784730
Coord A exon
chr17:11784731-11786902
Coord C2 exon
chr17:11786903-11787067
Length
2172 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTCTTGCTTGATATTTGCAGTCC
3' ss Score
5.43
Exon sequences
Seq C1 exon
ATTCATTAAAATTGGAGACAAAGAATGTGAATACAATCCCAAGTTCCGGCTCATCCTCCACACCAAGCTGGCTAATCCTCACTACCAGCCTGAGCTGCAGGCTCAGGCCACCCTGATCAACTTCACCGTGACCAGGGATGGCCTGGAGGACCAGTTGCTGGCCGCTGTGGTCAGCATGGAGAGGCCAGACTTGGAGCAGCTGAAG
Seq A exon
GTGAGGACAGAAGGGAGAAAATGTTCTGCCACTAGAGCCTGCAGTGTACTCCACTCTGGGAGAGGTTGCAGAGGGGGGCTGTTTTTCCTGGATTGAGTTAGGTGGGTTCTGCTAGACTCTGGAAGACTGCTGACCCCATGTAGCAACCTGGGAATACCATACTGGGGAAAGAAGGATGGGTGAGCTGAAGAACAGAAGCAAAAACAGTTTGAAGGCCGGGCATGGTGGCTCATGCCTATAATCTGAGCACTTTGGGAGGCCAAGGTGGGCGGATCATGAGGTCGGTAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAAATAAATATTAAAATTAACTGGGCATGGTGGCGCTAGCCTGTAGTCCTAGCTACTCGGGAAGCTGAGGCAGGAGAATCTCTTGAACCCGGGAGACGGAGGTTGCAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGAAATAGGGCGAGGTTCTGTCTCAAAAAAAAGAAAAAAAAAACAGCTTGGAGACTGGACACTCCTATGACCAAGAGCAGAGCCTGGCATGAACATGAGTGCTGCTGATCACACAGGTCCACGTGCCAGAACTAAGCGGAATGAAATTCTACAAGGGTAACAGAACTAGGTCCAACAGTGTTAGGGTCATGTCTTAGCTTGGGCTGCCATAACAAAATACCATAGACGGGGTGGCTTAAATAACACATATTTGTTCTCCTATAATTCTGGAAGTTGGAAGTCTGCGATCATGTTGGTTTTTGGTGAGGCCTCTTTTCCTGCCTTGGAGGCAGCGGCCTTCTCACTGTGACCTCACATGACCTCTTCTTTGCACATAAAGAAAGCCATGGCTCCACCCTGATGACCTCATTTAACCTTAATTACCTCCTTAAAGGCCACATCTCCAATATAGTCACATGGGGGAGTTAAGGCTTCAACATAGGACTTTTAGGACAACACAATTCAATCCACAGCAGATAACGTGCTTTTTGTCCTCTCTTTAAATGTGATTAGATTATACAATATGGCGGGGTCGGTAGGTGGAATTCCAGTGCATGAGAGATTGAGTTCAGGGCTCCCTGGGACTCCGCTTCCTGCAATCATTCATTCATTGAACAGATACCTAGGGAGCACCACCTCTGTAACAGGCAGGATTTGAGGTATGGAGGATTCAGCAGTGAACAAAGAAAACCATGTCCCAGCCTTCATGGAATCTACACTCTAGTGGAGGAACACAGAAAACAGCAACGTAAACAAATGAACAATGCCATTCAGATAGTGATAAGAATTTTTAAGAAAATAAAACAGGGTAATACTGGAAAGCCAGAGGGCAAATTTAAACAGTGGTGGTCAGAAAAAGATTCGGTGAGGAGTTGGCATCTGAGCTAATTCCTAAATAATTGTAAAGCCTCTGGGCATAGAGCATTCCCAGCACAGAGAACAGCAAATCCTGGTCTTAAGGCAGGATCAAGATATGTGGTTTTAAGAAACAAGAAAGGTCAGGGTGGCTGTGGTTGGAACCTCCAACAGGAAGGTTGTTCTTCCCACGAATCCAAAGGCTGTACAAGGGCAAAGACACTACAGCTGCCTGAAGTTAGTGCTTTAGGATATGGAGCATAAAGAGAGGAAGAGATGAGATCCACTTGGATACCAGCACCCCACTCCAGCCTCGAGGAAGCTTTTACACAGTCTGCCATGGTTTTACACAGTTTAAAACTGGAAGACAGATTCTGCTGATTTTTTTTTAAGTAAGCCATAGGAGAGTTGTTCATTAAAGTAAATTGGTAATAGAGAGAACTCTCCAGAGAACTAAAACTGGACCCTAACCCTCTAGTTACACAAATAAGCTCCGTTTAGTGAACACTGATAATGCAGTGTGTTGCCCATTGTGCATTAAGCATAGCACAGAAATCCTAAAAGTTGGGACTGGGATTACAGAAGAGTAAAGAGGGTAAACTGGCTCAAGGTCATGTGCCCAGAATATTGTACAGTTGGGCACCAATTTGACTCCTTGTCTCCTGCTCATGGTCTGAAGCTCTTTGCCATTCTGCCTCCACTTTACTATCTTTAAGGCAAGGGACTCTCGCCCTATTCAGACACATCCTTAGAGCAGGATGCCCTGGGCATCTGCACCTGACTGTCTCTTGCTTGATATTTGCAG
Seq C2 exon
TCCGATCTCACAAAGCAGCAGAATGGATTCAAAATTACCCTGAAAACGTTGGAAGACAGTCTTCTCTCTCGCCTCTCCTCCGCCTCTGGGAACTTCCTGGGAGAAACAGTGCTGGTGGAAAACCTAGAGATCACCAAGCAGACTGCTGCCGAAGTTGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-DNAH9:NM_001372:55
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(29.8=100)
A:
NA
C2:
PF127812=AAA_9=PD(22.8=94.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)