RnoINT0048700 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145832343-145833863:-
Coord C1 exon
chr6:145833659-145833863
Coord A exon
chr6:145832508-145833658
Coord C2 exon
chr6:145832343-145832507
Length
1151 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TCCCTAATATTTCCCATTAGCTA
3' ss Score
5.38
Exon sequences
Seq C1 exon
GTACATCAGGATTGGTGATAAAGAATGTGAATTCAACAAGAACTTCCGCCTCATCCTACACACGAAACTGGCAAACCCACACTACAAGCCAGAACTACAAGCCCAGACGACCCTCCTCAATTTCACAGTCACAGAAGATGGTCTTGAAGGCCAGCTGCTGGCAGAGGTAGTCAGTGTCGAAAGGCCAGATTTGGAGAGGCTAAAG
Seq A exon
GTAAATATTACTGCATCAACCCCGGAACTTACCCATCACCCCCTCAGCACAGATGACAATGCCAGATGCTTGCCTGTGAAGTAGGATTCTGCAACTGAGGAAAGTCCTCCTGAGAAATGCCAGGTAGCTAAGGCTGGGCATTAGCTGTGGAGAGGGACCAGAGCTCAGGCTTGGAGCTTGTCAGTCAGCTTCAGCTGTCATTTTCTTGATGTCTAACAGATATAAGAGGATCCAGTCCAATGTAAACCAGCCCAGAAAACTCTACTGGAAAAAAAAAAACTGGTGGTTTTCCTTTGCCAGTGGGTACCAATTAAAGATAGCCTCTTGGTTAGGGTTTGGACCCCATATCTACTCTCTTCTCTGTGCTGGGACCTCTGCTGGCTTAAGCCTGTATAGATCTTGTGTCTGCTGCCAGACTCTGTGCGATATATGTTCAACTCTCTGAGTTATCTGTTGTATCCTGGAGTCATCCGTTATAACCCTTCTCCTTGGTCAGCTTAGTTTCCCCATGGTGGGATTTTGGTAAGGGCAAGAGAAGGCTCTGTGGGTAGGAACTACCAAAATGATTACAGTTCCCCTGAGTTTCCTCCTGCTCTAGGCAACTGTGGTTTATTCTTTAGTCTTTACTGTGAGAATGCGGCATGCCTCCCAGAGAGAAAACAGAGATGGTGAGGGCTCCTCATGCTCCTGGGTACTCAGGAAGGTTTTACCCTCCTGCAAAGGCCAGGTACAGTTTATGGGTTCTGCTAGTGACTCTGAATTTTCTGGTGACAGTTGGCCCAAGACCTCTGTTCTTGGTAAAAGACAAGTGCTTACCTCTTTCCTTATTTTGAAATCTTCCTCATAATAGGTCTTCCAAGCTGTTTAAATGTCAGAGTATAAGCCAAAAACTTCTATTATTTTCTTAAGCAGTCTTCCTAGAGGTTATCAATGTTAAATAAGCATCCACGCTCTAAACCTTTAGATTCTAACCAAATGTTAGCATGCTGTCTTAGTTTTTTACGTAATGTTCGTAGTTCTGATCAGTGTGTTTTTTTTTTAACCATTGTGTTTCTTATCATGCTTGCGCTGACCCCTGTGGCTCCCGTGATTATGAGAACTGTTCTGAACAAAGCAGAGACTTAACCGCCATCCCTAATATTTCCCATTAG
Seq C2 exon
CTAGTTTTGACCAAGCACCAAAACGACTTTAAGATAGAGCTGAGGCATCTTGAGGAGGACCTTCTCCTGCGCCTCTCTGCTGCAGAGGGGAGCTTCCTGGATGACACGGACCTGGTAGAGCGCCTGGAGACCACCAAGGCCACTGCAGCAGAAATAGAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:73
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(29.8=100)
A:
NA
C2:
PF127812=AAA_9=PD(22.8=94.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAATTCAACAAGAACTTCCGCC
R:
TGTGCTCTATTTCTGCTGCAGT
Band lengths:
342-1493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]