DreINT0061628 @ danRer10
Intron Retention
Gene
ENSDARG00000045958 | egfl6
Description
EGF-like-domain, multiple 6 [Source:ZFIN;Acc:ZDB-GENE-040718-157]
Coordinates
chr9:54704417-54706733:+
Coord C1 exon
chr9:54704417-54704536
Coord A exon
chr9:54704537-54706598
Coord C2 exon
chr9:54706599-54706733
Length
2062 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
GTCCTCTTTCTCTTTCGCAGACA
3' ss Score
11.81
Exon sequences
Seq C1 exon
ACTCCAGGACGTGCTCTCTGGCTCACTGTCAGTACGGCTGTGAGGAGGTGCAGTCTGAGGTTCGCTGTCTCTGTCCATCCCCTGGCCTTCAGCTCGGGTCTGATGGAAAGACCTGCGAGG
Seq A exon
GTGAGAACTGAAATGAAAACATTCATTCATTCATTCATTGATCTCCTTCAGCTTAGTCCAAGGGTGTCCAAACTCGGTCCTGAAGGTCCGGTGTCCTTTATCTTTTAGCTTCAACCCCAATTAAACACACCTGAACCAGCTAATCAAGCTCTTTCTAGGTATACTAGAAACTTCCAGGGAGGTGTGTTGAAGGAGGTTGTAGCTAAACTATGCAGGACACGGGCCCTCCTGGACCGAGTTTGGACACCCCTAGCTTAGTCCCTTTATTCATCAGGGCCCAGTTTTTCAAAAGTAATCCACTAGGATTTTGGATAAGGGATTGGATCAAATCTTGAAAATGGGTTTTTCAAAAGAAAAAACGGATTACGTAATCGGATTAGATCACATAATCCAATCTTTGTTTTGATCCGGATCAAACCTTTAGTTTGGGTTTTTCAGACCTTTTTTGTAGGATTTGGATCACTTTGATCCAAAAAACCTGGATTAAACTGATCCCATCAGAAGGGTGGATTTAGCGTGGATTTCATGCCCAAAATGTGATGAAAACTTCAAAAAATTATTAAATAAAACTACATTTGGATCATGCAGTATCTTACGAGATATACAATTTATTCATAAGGTTTTAATTTTATTTGTTCATCTGTCAGGCTATAGTGATTATAGGCTTTAACGTATTCAGCCTTTCAGTATAGGCCTACAGCAAAGTAGAAAGAGTTTGGCCTCATAAAATAATCCCCCAAACAGCTGTCAAAATTTACCAAAAACAATACATTTTATTATGTTACTAATTGATATATAGTCCAAGGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAAATATATATATATATATATATAAATATATATATATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCACTGGTAATCCAGATTTAGTGGTCCTAAAAAGTTCCTATCCGGATCAGATTGATCCAATCCAATGTTGCTTTGAAAAACTGGCTCAAAAAGTAAACTGGATTACGTGATCACGAATCGCAAAAACAGGATTACTAAATCCGTATCAATTTTATCCGGATTAAACCTTTTAAAAAAAAACGGGCCCAGAGGCACAGTGGAATGAGCGCACATATGAGCGCAAATGCATTTGCTATTTAAACAGCGTGGCGGAAAACATCAAAACGACTCTTGCGCCAAGCTGAAACTAGCAAACAACTATTGCGTTGTGCCTTGCGCCACATTGTGCCAAGTGTATGATAGGGCACTCTTTCACACACACACTAATACACTACGGCCAATTTAGTTAATCAATTTCCCTATGGCACATGTGTTTGGACTGTGGGGGAAACCGGAGCACCAGGAGGAAACCCATGGCAACACTGGGAGAACATGCAAACTCCACACAGAATCGCCAACTTACCCAGCTGAAACTCGAATCAGCAACCTTCTTGCTGTGAGGCCACAGTGCAAACCACTGAGCCACAGTGCCTCCCAGCTAGTAAACAAGAACAAAAAAAACTCTGAACTCATTGGTCATATCAAGCTCTGTGATCTAATAACAGTGAATGTTCTCCATGCACTCTTCTTGTTGTCCTCTTTCTCTTTCGCAG
Seq C2 exon
ACATTGATGAATGTGCGACTGGGAAAAACCAGTGTCCGTTTAACCGGCAGTGCACAAACACATTCGGCAGCTACTACTGCAAGTGTCAGCCAGGATACGACCTCAAATACATCAATGGAAAATACGACTGCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045958:ENSDART00000067544:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(8.9=9.8),PF146701=FXa_inhibition=PD(92.7=92.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]