GgaINT0111875 @ galGal4
Intron Retention
Gene
ENSGALG00000016584 | EGFL6
Description
epidermal growth factor-like protein 6 precursor [Source:RefSeq peptide;Acc:NP_001264667]
Coordinates
chr1:122489804-122492954:-
Coord C1 exon
chr1:122492835-122492954
Coord A exon
chr1:122489939-122492834
Coord C2 exon
chr1:122489804-122489938
Length
2896 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGG
5' ss Score
5.53
3' ss Seq
CATCCCTGTTCCTGATCTAGATA
3' ss Score
9.15
Exon sequences
Seq C1 exon
GCTCTAGGACATGTGCCATTGCGAATTGCCAGTACGGATGTGAGGAAGTCAAAGAGGAGGTACAGTGTCTTTGTCCATCAGTTGGCCTCCATTTGGGACCAAATGGAAGGACATGCATTG
Seq A exon
GTATGGTTAGAGAGCTCACTTTCAGCTTCTTCTCTATAGGATCCCCAAAAACTAAAGAGTTTGGGGGAATAGTAATAAGTATTTATCCCTTCTCACTAGCTTTAGTAATGTTTCTTGTTACTTACAGTGTGATGTAAAGTTTGCATGCTTTTTTAATAATAATTCTTACAATATTGGCACTATAATTCCTTGGACTAGTTCCATCCACAATAAATAAACAAACGTTTTGACTTATACTGTAGTCATTATGGGGTTCTCTGTTTCTCTGAAGCTGCTATGTGCAGTATAGGAGGCTGTCCCGGTGAGGTGACATAATGCATTATAGGATTTGGGAGTCATGTTTGAATGTTTTTTCCTGTATTGTGATGACCCATAATAGAAACTTCTGTATTTTTCTACAGAAGCCTTGACATCATTTTACGTAGGGATTCCCTGTGATAAGGTAGCATTGCTTCATAACACTTGGTACTGTTTAGTGACAACAGTTTTACGTTGCTATCTGCTAAGGCAGGACTACAGCATTGCAATCCGGTGTTGAAATGGTACCCATTTTAATATTGAAGCTAAGCTAACGTCAGAACATCAGTGGACATGAAATGAACCCTCCAAAGCAGGGACCAGCCCAAGATGGAGAAGAAGAGGCAGTGAAGTGCATGTCAGGGAGCAGCAGTAGCAGGCTTCTTCCCTGAAGTGGGTGAGCTGGGAGCCATAGGTGACCCCACAACTAGCAGTGCTATGTCTGCACTGACCAGTGTCCTCTCCCACAGCATCACATCACACTGGCTGACCAGGGCTGGTAACAGGGCAAGTGACAAGGTCAGGTGATAAATCAAGTCCAGTGTCTGTCTGTCTGCAGAAAAGCTACCAACAGAGTAGTCCTGAGGTCCATGCAGGAACAGGACTGGAAATGGGCATGACTGCAGCACATTTTGGGTGGGAACTCAAAGCCCAGGACTGAGCTGAAATGGGACTCCTCGGTCTGTGGTTGGGTGGAGATCTATGATGAGGCTGGTTCAGGTGAACGAGACCTCCCAGTATATGCAGGAGCAGCACAAACATTTCCAAAGCTGGAATATTGCTGTTATTCGTCATCAAAAACAAACCTGAAAGGCTATGGAAACATTTATTTTTCAGATTGAATGTTCTCTGCTAAATTGTTTTAAATTTAATAGAAGATTGAAAATGGCAGCTAGAAAATGTTTCATTTCCCAGAGTTGCCCAAAATATAAACATGTTTTTGCAATGAGTTCTATTTGCTACAATGTCCTTAACAACATACCTGATTTCACATTGCATTATGGTATTTCTCTAACAATTGTACAAGTCCTCCAGATTATAAAGGGTGGTTTGGACAGGAGGAATAACAGTAGCAGCTCCATGCCAGATGCTGCTTACCAGTACTTACTGGTTGAATGGCATCTTCACACTAAAGAATGTTTTAAATGTTGAAAAGTTTGACATGCCAGATATAGAAATGAATTCCGGCTCTAATGGCCAAAACAATATTATGCTTAACATTTCAAAAAACAAACTAATGAGTCATCCAAGAGGCAGTGCTACATACAAGGACAGTTACTATATGAGTTATTCTCCTTAATGTACAGCTATAGTATCAAGTCAGGTATGAATGTCATATAGCATGTGGCTATTTTCTCATTTTTAGGAACCACAGAGTAAGCCCGTATGGATACTTTGCTTAATTTCTAAACTGTAAACACTCCAACATGAGAACATTATTTCTCTCTTTCAAATGAAATGAATTTGTAATTGGAAATGTTCAGCTTTGAAGAGTCAGCAAGGCTCTCACACTACCAGCAAGCAAGTTAATTTTTGTTTGAATTGTTCAAGAGCTACTTGAAGTTGAACACTGTTGGCATATGTTATTAAATAGAATCAAGAAGATAAGTGGTTCTCTTCCTGAATTATTCAGGCAGTTATTTTTATTCTCTTGTACTGAGTATATGTGCATTTACCTTGCTTGCCCAAATGGATTTGGAGGAATGCTGGTACATATTGATAGAAGATAAAACACACAAAGAGGTATATCCAGTGGTTGGAAATAGCATACCCCTTCTTCCTATACAACTTCTGTTAGGTCACTCTTTTCTATCATCACCTGTTCTCCATCTCTAAAATAAGAGAACAACTTCCTGCTGTATAGCATACTGGATGCGTAAAGGATTCTAAGATACTCTTAATACTTGAGTATTGGTTTTAGAAATGCTATAAACAGGTAAAGGTTTGAAGATCCCTGGCTGTTTGTCTGAGCTTAATCCTCCTAAGAAGCTGCATTATTCCTGAATTAAATTGATAACATTTAATTACAGTGACTGTTTAATAGCGTTCTTTGTTTCCTCCCATACCAAGCTGCCTTATCTCTCCAAAACATCTGCCACTGTTACCTACCTTGCCAGGCACAGCACTTGCGGTCTGCAGTCTCTGCCTTGACTTAGCCCAGCAGGGAAGGTGCAGAGATTCAGCAGAAATAGCTGCTGCTCCTGCTCCTTGCTGCTCTGTTTCCTGTTTTGGAGGCTTTCTCTTAAACTGTTCTCTGATGTTTCCTTCCTCAGAGAAATCATGGAATTTCAGGAGTCCTTCTCTGTCCTATTTTGTGACCTTATGGCAAATCATTCACCTCAGTGGAGAGCCCTTACAGTCAGCATGGCTTTTGCCATGTCAGGTCTCAAAATCTTCCATTAAGTTAGTGGACATTTTTGCCATTTCTTTCATATTTAAACATGCAAAAGACATTCCCAAGTGTGTTCATTATAGGACTTATTTATTGAACACTGTGTGATAACCAAGACCAAAGTATAGCTGTGCAAATCCCAACTAGTTCCTGCTTGACCATTTCAATTTCTTTTGGATCTGACCAGCATCCCTGTTCCTGATCTAG
Seq C2 exon
ATATTGATGAATGCTCCACTGGCAGAGCTGTCTGCTCTTTCAATCGCAGATGTGTCAACACATTTGGAAGCTACTACTGCAAGTGCCAGCTTGGTTATGAGCTGAAATACATCAGTGGCCATTATGACTGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016584:ENSGALT00000026770:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=PD(9.8=9.8),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]