MmuINT0055804 @ mm10
Intron Retention
Gene
ENSMUSG00000000402 | Egfl6
Description
EGF-like-domain, multiple 6 [Source:MGI Symbol;Acc:MGI:1858599]
Coordinates
chrX:166548823-166552544:-
Coord C1 exon
chrX:166552425-166552544
Coord A exon
chrX:166548958-166552424
Coord C2 exon
chrX:166548823-166548957
Length
3467 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
3' ss Seq
CTTCTACTCCTCTATTCTAGATA
3' ss Score
9.94
Exon sequences
Seq C1 exon
ACTCCAGGACGTGTGCCAGACTAAACTGCCAGTACGGCTGTGAAGACACAGAGGAAGGGCCACGGTGTGTGTGTCCATCCTCTGGCCTCCGCCTGGGCCCAAATGGAAGAGTATGCCTAG
Seq A exon
GTAAAACAGAAAGTGTCACCTCCATTCCCTTCCATCCCCCTCCCATTACCCCTCCATCTCCCTCCCGTTACCCCTCCATCTCCCTCCCATTACCCTTCCATTCCCCTCCATCCTTTCTTCACTGAACTCCATTTTCACTCACCACTAGGCTTGTGTTGACTAGATACAGTAAATTCTTCAAAGTATTGATCTCTGTCTACGAAATATCTTCAGTCATTTGTGCTCTCTAAATACTTTGGGATAGAAAGGAAACCCAGTTTTCTAGTAGTCTATACTGCCGAGTGCCAGAATGAATAGGGCACAAAAGATTCTTTTTATTTACTGTACTGCCACCACATAGCTGACTTCAATCACCATGTGACGGACACTGCACCATCCCTTCAATCTTACGTGTCACGGGGATTTGTTTCAAGTCCTGGCTATCATTTTCCTGGAAAACTTGTGTTTACTTTTTTGTTCTCAGGATTAATTTAGTGAAAATAGTATCTGCCTCCCACGACATTTAGGCAGTGTTTTAAATGCTTTTTCACATTCTCTTTAGAAACCTACTCTAGGGGATGGAGCTAGAGCATAGTTAGTGCTTGTCTAGCATTTGCAAACCCTTGGGCTCAATCCCCACCACCTTATAAACCAGGTGTGGCAGAATGTACCTGTCACCATGGTACTCAGCAGATGACAGCAGGGAGACCAGAGGTCATCAGGGAGATCAAAGGTCTTCCTCAGCAAGTTCAAAGCTAGTCTGGATTACCTTAGACTCTTTCTCAAAAAAAAAGTCTTTATAAAAATTATCCAGCACACAGTAGGCAGGGTCAAGCGGACTTCTGTGAATTCGAGGCCAACTTGGCCTACATAGTGAGTTCTAAGTCAGCCAGAAATACATAGTGACACCTTGTCTCAAAAAAGTAAAAATGTAAGTTCATTGCTATATCTGGCTAGACAAAACAGGCAGATTAAATCAGTACCAATTAAACACATAAACCATTCATTCATAGCTGTAAATTTAGTACAAGCTGTGGCCTAAAGCTTTAGCATCCTTTCTCGTGTGTTATTGCACATCTTACTGTGTGAGTCCACAGAAGCCGTGTTGGTTCAGTAAATGATCCCAGGAAACACTGGTTGAGCACTTAGGAAGTATCACAGGAAAAAGCAGGTACCAGCACTGAGTGAATTCGGTGAGCGGGTTCACTGAGCTCTGGACACCTCTGGGAGACCAACTGTATGTACTTGTTACTTTCCTCATTGCTTTGACCAAAATATTTGACAAGAAGAAACTTAGGGGAGGAAGGGTTTATTTGACTTATGATTTGAGAGGATGTAGAGAATACCATAGTGGAGGATGGGTTGCAGCAGGAGTGGAAGGCAAGGCAGATGGTCACATTGCATCCACATTCAGAAAGCAGAGAAGTGAGATTTCAAGTCCCGCCCCCAGTCACTCCCTTCCTCTGGTAAGACTCCTCCTCCTAAGAGCCCCCACAGTCTTTCCAAATATCACCAGAGACCGAGTGTTCAAAGGCCTGAGCCGATGGAGGACATTTCACATTCAGTCTACATGTCGGAGGAAAGCTGCCTCTTGGCTTTCCTCCTCAGGCAAGGATTTTGGGTCACCTCTCCACCAACCACTGCTGTTCCCTCACGGGGTGCTGCTCCAGGGTGAGACTCCCTAGTCCTCACAGTAGGACCCAGGAACAAGTCTAGCAGGCAGCCTATGGCAGCAATGGGACCTTTGAGGGCTGAGTGGCACAGCGCCCTTGGTGGCTGAAGCACCATTTCACTCATTTTTGCATGTTGATTACTTTTGTGAGTTTGAGTTATGTTCAATCATGTAACTGCATATTCCTTACAATCATATTGCACCAAGTACATATAACATTTAGAGTGGGTGAATACAATATTCTCAATAGGGAAGAACCAATGAGGCCAGACTCTTAAAAAAAAAAAAAAAAAGGCCATCTTCTTTGATTTAAAATCTAAGCGTGATGTAACAACCTCTTCAATGTAATAGAAATGTTTTTCACTCAGGATGCTGGGTGTTCATTTATCCTAAATGGATATAGTTTGATGAATTTTATATGTAAAGCAAGCTCAGCTGCATAGGCCAAGGAAGCACTTTTTAAAACATGCATGTATATTAAACTCTGTCTTCTTTTTTTGTTTTTTTTTTTGTTTTGTTTTTCTTTGTTGTTATTGTTATCATTGTTGTTTGGTTTGATTTTCAAGACAGGGTTTCTCTGTGTAACAGCCCTGCTTGTCTGTCCTGGAACTCTCTCTGTAAACCAGACTGGCCTTGAAGTCACAGATATCTGACTGACTCTGCCTCCCGTGTGCTGGGATTAACTTTGTTCAAATCAATACTTACTTGTTATTTTAAGAGTGCAGCAGGATAGCTCAGTCACTGAGGTACTCACCATATATACATGTGCCCCCAGATCCCTAGCATTCACTCATGGGGTGGGGGAGAGGATGGGGGCCTGTGAAATGCAAACAATAAGCCAGCATTAACTTGCATGCTTAACCCAAGGTCCAACCTACTTGATACCTGGAAGTTAGAGCAATGCCTGAGTCTTAGCAAATTGCTCAGCCTAGCTGTCAGTGTGCCGTGTGACATCACTCACTCCGGAGAAATGTAGCATGCCTATATAATTGATTTAAGCTTCATTGTTACACAGTTATAATCGACTAACAACTTAAACAATGGTGCGTGCTTCCACAACTACATTTTTTTTTTTTTTTTTTTGGTGATTTGAGTCAATCTTACAGGAGCTTAGAAGGAGCTATTTAATACTTTTACAAAATGCAAATCTCAAATGTTCATGTCTTTCGGGTTGCTCAGAGTGAGGCTGACTGCACTTTCAAAAATTGTATGCTATGCAATATAATTAGTTCCTTGGGAAAATAGTCACTCGCCACATGCATGAAGTATAGGGACCACCACATGCTAGACACACACTCCGCCGTAAAGAGCTGGAGCCTGACACATAAGCAGATATAAGGAGTGAGGATGCAATTCAGTTGATAGGGTGCATGCCTAGCAAGCACGCAGCCTGGCGTTCCATCCTCAGCACCACATAAACAAGGCATGAGGGTCTGTAATCCCAGCACTAGGAACATGGGGGCAGGAGGATGAGGAATCAAAGGTCATCCTTGGCTACACAGTGAGTCTGAGGCCAACCTAGGATACATGTCAGAGAGTGGGGAGGGGGAACAAATAATGACATTGGAGCCAGGGCCATTTAAGACCTCCAAGAAAAGTTGGACATAATTGATATGAACCTGTAAGCTAAAGAGCTGGGCACATGCCTGGTGAAGATCTAGAATACTTCCTGAAGACTTGACCTTGGCAGCAGTCACTTGGTCTTCCAGGCAAGAAGACTGGGCATGTGCTTGGCCATTGTGTGGGTACCTGTGCAGGTACATGTGTCAGAGTACTCTTCCCTCAACCTCTGACGGCTTCTACTCCTCTATTCTAG
Seq C2 exon
ATATCGATGAATGTGCGTCTAGCAAAGCAGTCTGCCCTTCCAATCGAAGATGCGTGAACACGTTTGGAAGCTACTACTGCAAATGTCACATTGGTTTTGAGCTGAAATATATCGGTCGCCGATATGATTGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000402:ENSMUST00000000412:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(8.9=9.8),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types