DreINT0063293 @ danRer10
Intron Retention
Gene
ENSDARG00000005565 | entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:ZFIN;Acc:ZDB-GENE-040724-142]
Coordinates
chr6:41056933-41059832:+
Coord C1 exon
chr6:41056933-41057067
Coord A exon
chr6:41057068-41059149
Coord C2 exon
chr6:41059150-41059832
Length
2082 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TGATTGTCTGCCGGTTACAGGTT
3' ss Score
7.79
Exon sequences
Seq C1 exon
CTAACTGCTGAAAATCCATCCATTAAGCCAAAATACCTGAAAGATTATTGTGCTTCTGGTCACTATATTACTACTATTCTCTTGAAAGGATACAAGTTCAATAACACCTGGGATCAAATTTCTTTTGTAAAACAG
Seq A exon
GTAAAAAGACATAAGTCTTGAATATTCATTTTTCTGTACAGCAATATAGCTTTGATTCAGGAAGGATGTTTTATATGAATTTGTCCCAAAAGGATTTTTAAAAAAGTCTTTGTTAAAGACATTATACGCCATGAATCAACCCAACCAAAGAATCATTCATTCATTCATTTTCTTTTCGGCCTAGTCCCTTTATTAATCTGGCATCGCCACAGCAGAATGAACCGCCAACTTATCCAGCAAATGTTTTACGCAGCGGATGCCCTTCCAGCTGCAACCCATCACTGGGAAACACTCATACACTCTCATTCACACTCATACACTACGGACAATTTTTTAGCTTACCCAATTCACCTGTACCGCATGTCTTTGGAGTAGTAGGGGAAACTGGAGCACCCGAAGGAATCTTGCGTGAATGCGGAGAGAACATGCACATGTCAACTGACCCGGCCGGGGCTCGAACCGGCGACCTTCTTGCTGTGAGGCGACAGCGCTACCTACTGCGCCACCGCGTTGCCCCCAAGAATCATAACAATCCAAACTTGAATTGAAATGAAGACTTGTAATAACATGCAAGATACACTGACTATTATGACTGTACACTTAACGACTTTAAAAAGATAGTTCAGCCAATAATGAAAAATCTGTCATCATTAATTCGTCCTCCGCTTGAAAACAAACGGCCATTGACTTCCATACTTATTTACTTACTCACGGCCATTTAAATCGAAGTTGATATTTAGCTGCACCATACTGGTGTTTCGTAACATCTAGCTTTTTAATGAGGTGAGATGTTAGTCCAACGCTCAACCCCCAATCTGGAAGACTAGGACACACACATATACACTACAGACAATATAGCTTACCCAATTCACTTAGTCTTTGGACTGTGGGGGAAACTGGAGCATATATCATCATTTAGCGTCATGGTGGTATACAGTGGGTAGCATGATCAGCAAGAAGGTCACTGGTTCGAGCCTCGGCTGGGTCAGTTGACATTTTTTGTGTGGAGTTTGCATGTTTCTGTGTTCACATGGGTTTCCTCTGGGTGCTCCGGTTTCCCCCACAAGTCCAAAGACGTGGTATAGGTGAATTGGGTAAGCTAACTTGACCGTGGTGTGTGTGAATGAGTATGTATAGATGTTTCCCAGTGATAGGTTGCAGTTGGAAGAGCATCCGCTGCGTAAAACTTATGCTGAATAAGTTGGCGGTTCATTCCGCTGTGGCGACCCCAGATTATTTAGGGGACTAAGCCAAAAAGGAAATGAATGAATATCATCATTTAACAGCCTTGGAGCTCAAAACAGGTCTATGATTTATCATTTTTTTATTATAATCATTGGGGTATGGAAAAATTGAGAAGGAATCCTCACTGTTGCACTCTATTAGTTGCTGTAATACAAATTAATAATCCCATGAGGAAACTTTACTATTTAACATGTTGTCAGATATTTCATATGAAGATGTACACCTCTAAACCCAACCATCATTGGGGCATGAGCAAATCAAACTAAAATGTTTGAATGAGACCGTACACATTCACATGACAGCCACTAAAATCCAAAAGTTATGAATTGCCATGAGATTGTGTTGGAACATCAGCAGTACTGCTACTAATAATAGATTAGGCAGATAATTTGTTTGTAATTAAAAATGTCACCAAGTTGAGCAATAATTACTGCTACATGATGTGGTTGTTGAAGTATTTGCACCTTAACAGTCGTCAGAACAGAATGTTCTGTGAGTTATTTGGTGTGATATTTGCTCCGCACCTCTTCCGCTGTGATTGGACTGTTGTGAAACGCTCAGGATCGCGTCACATGGCTGGTGTTTTATTAAAAACACACCATACCATCGAAAATTACTGAAAAAGATTGTTACAGCCCATGATATTATAAATATAACATTATGCAAGAGCACAACGTCAACAGCTCATAAACTGACATCATAATGTGATCCTCAAGCACATAAACCAATAAATCACATTGACCTTTGCTTGGGGGAATCTCTCCTGACATAAAGCCTTTTCTCCTATCAGTGTGACGTGGAGATTTGCACTCATTTATGATTGTCTGCCGGTTACAG
Seq C2 exon
GTTGCAGATACAGATATTGGTTGGACGCTGGGCTACATGCTGAACCTGACCAACATGATTCCTTCTGAACGCTCCAGTGCCGTTACTGGAGTGCCACACAGTCAATGGGCCGCTGAGATTTTCTTCATCGCATTTGCCCTCTTCCTCACTCTACTTATTATAGTCATCCTATCTGTCCGTGATATAACTAAGTAAACTGTGTTATGAATATATGTATGTACATTAGTATTTATCAGATAATAGACATGTAAATGGACGAGGAACTATTGTTTACACAAACACTGAACTCTTTTTTTTTTCATTCTGTACATTTGTAGTTGATATTTCTTCATAACTTATTCAAAGTAGTGTCTTGTTTTTTATGGCTGACTAGTTCATACCTCAATCATTTAGTCTGTGCCAAATAATAATACATGAAATTTGGTTACAGAGATTTTTCTTTATTCATAAACTGAATTATGGGAGTTTAGTTTTTTTAAGGAACAAAAAGCACTTAACAGATATTAAATAAAGCTATAGTTACATTATTATAAAAATGAAGAAAATGTACTGTGCTTTGTACATATTTATAGAATTAAGCAATATTGTAAAAGCAGCTTGTGTTTCCAGTTTAGCCTTCACTTTTTGTTTGGGGTCAGTAAGATTTTTACAAATTTCTAAAATAAAACATTCCATTGTTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005565:ENSDART00000011245:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(10.2=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(6.7=44.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]