DreINT0063355 @ danRer10
Intron Retention
Gene
ENSDARG00000061108 | ep300b
Description
E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
Coordinates
chr3:24920443-24925247:-
Coord C1 exon
chr3:24923361-24925247
Coord A exon
chr3:24921024-24923360
Coord C2 exon
chr3:24920443-24921023
Length
2337 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
3' ss Seq
TCTGTTTTCCTGTCTTTCAGATT
3' ss Score
12.94
Exon sequences
Seq C1 exon
AGTGAAGGAGGCAGGAGCGACCGAAAAAAAGCCACTCGAGCGCCGACCACTGCGACTCTGAGCGCCGCCGGCTCCGTCCTCGCGGATCCAGACCGGAGAAAACACAAGCCGGGCGGTTAGCGGAGGACACGGAGGGCAGATTACAGATTCTCCCGTGTGGAAATCAAAGAGCAGACTGGTTTTGCCTTTCTTTTTCTGTTCTTTTTTTGAAACGGAGCGGAGAGGCGGAAGAGGGCAATACATTTAAACGAAGGGAAGCTCGTCAGGGGAAAAGGAAAATAACAGCGTCACGAAGTGGGAATATCTGTGAAATTACATCGCCGGTTGCTGGCGGACGACAGCGAAAGTGGGGAAAATCGCAGGAACTGTGCAGGAGAAGGGAGAAATTTAAAAGGGATGAACGCGCAGGGGGGTTCACAGCATCACAAAGCCTATGAAAGGGGTTTGAGGACCCCCAGATTTTGGGGGGTGCAGCTGGCAATATCACCCGGATCGGCAGATGCTTCAGACCCCAAATATTAGTGAAGCCAGCCTCGTTTCGGTCCATTTCTATTTTCGACCCACCGCTGTTCCTCTCGCTCTTTCTTATTGCTCCGCGAAGAAGCTCTCGGGCTGTGCAGTGACAAATTATTCTTATTTGCTCGATGTGTCAGTGCGCTGAAATACAGGCAAATGCATTGAACAACTTCACTCGATTCCCATTCTTTGGCTCGCGACTTCATCTTCTCGCACTTCGACCAATTGCATACATGTTCTGTCCGCTAGACAGCCACTTTTAAAAGCATTTCTTTGCATTTTGCATGCACGAGCTGTGCGCAGTGCAGGGTGGTCTCCTGAAGCAATGGTCAGAGATTTTCTGCAAACACTTTTAACTCGTGCAGTGGACACATTCACACAGAGGGCGCACGAGCCATATTCAGATACGAACGCACAATAAACCATTGAACTTGTCACTTTGAAGTGTTGTTGCAAAATACCACGACATGGACACTGAAATATGCAAGTTGTTTGGAATCGTTTAACGCGGTAGTCCGTGCATGCAAACTGAAGTCGCCTCAGTCCTCGAGTGCACATTTCTCATGTTATTTATTCTGCAAAGAGTATTATGTAAGGACGAAAGGACACCTTTACATTGTTTAATTGTATTCCGAGTATTTATTCGTTTTCTCCATCCGTCTTACTTTCTTGGAAGGACATAAAGGCATTGATGAAGAAGATTCACACATCTGTGCTAGTTTTGAGGTGCATGGTGGACTTTTAATCTTCGAAGTACAGTGATGCTGGCCGAGAATTGCACATGCTACAATGTAAAGAAGAAAGACACACAATTCTGAATCCGAGTGTTTGATCGGGAGCATTGCACGAAGCGGAGTGAGTTCGCTTTCTCGTACACAACGCCTTTAAAAAAAAAGCAACACTTCAGTTCGCCGCCGACAATGGCGGAAAAGACGGATGCAAGCAGCGAGGATAAATCTCGGGAAAATTGCTCGGTCGCCGAGGAGGCTACGTGAGTTTGCGGCGAGCTTGCATGACCGTCTGTTCCTCCCTTCACCTCCTCCTTTCGGAAATATACTTTGAGGAGCTAAAGACTACAAATTCTTAAAAGGGAGCATTAAAGGTGGACTGAACACTCAAGCATTGCATTGCATGCATGTATCGTCCCATGAAAGGGAAACGGGAATCCGTCCGGTGTTCGTGAACGGGGAGATTTCATTCGCTCATCGGCTAGCGACTGCACAGGAAGGGCTATCCTACGCGGGATATATGCTTTAACACTAAACCGGAGGAAAACTATGGCCGATAATGTGCTGGACTCCGGTCCGCCTACAGCTAAGAGGCCTAAATTGTCTTCCCCGGCTCTGTCGGTCTCCGCAAGCGATGGAAACG
Seq A exon
GTAAATAACAATAATAATGTTCACGCGCTGCGGTGTGCGGTGAGTCTCGCGCTTGCACACCGTCGCTGTTCGCGTGCATGTATGAAAATAAGACACGCGACGTGTGTTTTAACAGCTTCCCTTTGTTGTGTGTGTGTTTGTCTCAACCCCAGGCATTTAAATAACTTAGCAGAGTAGCTAGCAGGCTAATTGTCTCCGTGTTTATATCTGAAGTTGATGAGGTGTGTGTTACAATGGTCATCCGAGTGTGCAGTGTTTTTCCGGGTGTGAGTTACACAAACTTTTCGCATTGTGTCTCTTTATTAGAATGCTTTGGTGTCAAAGGTTTACGAGGTGATGCGTTTTGAGCTTGTCAGGAAATGGGAAAACTCCACATGAACTCCTTATAAATCACATCGCTTTGCTGACACACGGTTGGCAATGAAGTTGAAGCTTGTCGAGTTAGTTTACAGGAACTACATGGTAGATGATAGTGTTTGCAAGTCAACAATAAGCAGTAGATGCTAGCTCATATACATCTTAAACTAGCCTAAGGTGATTTGCTGTTTTCGCTTTTTGAGCAGAGGTGTCCAAGCTAAAAGCAACATGACCATTGGAGACTATTTACCCATAACAGTCTGTTTGAAGCAGTGTTTTCTATGGCGGAATTTAGTGTCTAACAGGATGATGTTTGATATGAATTGTAGCAATCCATCAGTACATTTGTTTCTTTAAATGGTAGATTGTGATCCAAAGCAGTTGGTTGCTGTTATTATTGCATGAATTTAATGCAATTGGACAACAGGAAACGAATCAAAATAGTTTTGTATATAAAACTAAAGTAATAACTGATATTAAGTTTAATATAAATATAGCACTGTTTAAGTACTGAGAACTACTAACTACTTTAAGTACTGAGAAAGGTGATGTATGTAAACTTTAAACTTGAAATATTTACCTTAAGTTATTCTATTGCACACTGTCCCAACACCTTTATAAGCCAGCCAATGGAAGTTTGCAATGTTTTGAATATTTTCATTAATGTATATACATTTTAAATTCTATATATGCAGTTTTTTGTGTGCCACAAATGCTTGAAATATGATAAACACTGTGATTTTTAATCATGAGCATGTCTAAATATACATGCATTAAAAAATTCTTTAATTATATTGTGACAGCAATTCATGAAATCAGGTTTTTATATTACCTGTGTGGCATTTTACCAATTTTCAACCCTGTTATACCCCGTTTCCTTTTGTTTTAAAACAGCCAAAATGGTAAACAAAATATTTAGTTATTCATGACGTTGTCAGGTTAATCGCTTTGCTTTTCTATAAGTCCCTCACAAGCGCTCAGAAGTTTGCCGGATTCATATGTAGAGTATGTTCAATGTATTAGTTGTTGGTATGTTTCTGTTATCAGGACCTGCCATTATGTAGGAAAAAGGCCCCCATTTTGTCCCAGAGCTTGTCCATTGTTATGCCATACCATGTGTTTTTTATTAGTATGAACCATTAGGACATGCACACCGGTTCTACTGCATACTGCTCTCCAATGCTCTGTCTCTCATCACAATCATCTGTTGCAGCCAACAGCAGAGATTTGTTCAGTTGCAGTTCGGTCAGATTTTGTTGATTTCTTGCTGTATACTGATTGATAGACCGATATATTGACCGAGACGATTAACCGGATGATATTTGACCACTGGAGACTTGCTGTTCATTTCACTGTCTTTTAGGTTTTTTTAGGTACAAGTTACATTCATATGCACTTCAGTAAAATTGGATTGCTTTTCCAATGGCTCATACTGTTGACACCAAGCGTGATAATGATTTAAAGATATAATTCTATATATTAATGCATGACATGTCTATAATAGTAATGACAAGGAGAAACAATTTTTGGGAATTATGTTCCTCTTTACTTTAATAAACTTGGGCGTTTTAAATGGATAATGACCCAAAAATGAACGATTACTGCTTCTTAAATGATTCCAAACCTTTTTTTTTTCTGTTGAACACAAAATAAGATATTTTGAAGAATGCTGGAACCCGGTAGCCATTGACATCTATAGTACGTAATACAAATACTATGGAAGTCAATGGCTACAGGTTTCCAGCATTCTTCACTGCTGTGCAACAGAAGAATTAAGTTTGGAGGAAGTAGAGGGTGCATAAATTGACAGATTTTAGTTTTGTTTAGATTTTTTTCTCACTTTAACACATTATTCCAGGTGGAAACGGGGTATGCTTATCATTTTATGTGTGAGCAGGCCTTAATGATGCTTTGATTTATCTAATTGAGAATGATTTTTTTGTGAGCGGCAACCTAAAGGTCTGTTTTCCTGTCTTTCAG
Seq C2 exon
ATTTTGGCTCTCTGTTTGACCTGGAGCATGACCTCCCAGATGAGCTCATTAACTCCTCCGACCTGGGCCTTCCAAACGGGATGGACCCCAGCCAGTTGCACACCAGTCTGGGTGGAGGAGGGATGTCAGGCCCTTTGGGCGTCTCGGGCCAAGACACTGCGGCCAAACACAAGCACCTGTCTGAGCTCCTCCGCCCTGGTGCTCCTCCATCCGCCTCCACGGCCACCGGCAGCCCCGGTAACGCTGCCTCCTTAGGAATGATGGGAGGTCTGAGCGGTGGCCCTGTTACTCAGGGAATGGGTGGCCCTCAGCAGCAGCCTAGCATGATGCCGCAGCCTGGCATGGTGGGGGGACTGAACCGAGCCATGATGGGCACCCAGAAAGGGAATGGACAGCCGCAGAGTATGATGGGTGGGCAGATGATGAATGGTGCACCTAGAATGGGCTACGCCAATGTGAACATGAATGCAGGCATGGCTGGCAACGGGAATATGCTGCCCGATTCTCTGCAGCAGCCAAATGCAGGGCAGCAGATGGCACAGGCAGCAATGAGACCGCAGCAACCAGGAGCAGTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061108:ENSDART00000156459:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=NA C2=0.990
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]