DreINT0066864 @ danRer10
Intron Retention
Gene
ENSDARG00000089357 | fam73b
Description
family with sequence similarity 73, member B [Source:ZFIN;Acc:ZDB-GENE-050320-135]
Coordinates
chr21:3699022-3700426:+
Coord C1 exon
chr21:3699022-3699269
Coord A exon
chr21:3699270-3700310
Coord C2 exon
chr21:3700311-3700426
Length
1041 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ATAACTTTGTGTGTTTCCAGGTC
3' ss Score
10.5
Exon sequences
Seq C1 exon
CAAGCAGACAAACAAATCTCTCTCTCTCTCTGTTTCTCAGTCTATCTTCTCTCAGCTGAAGTTGAGTCCCAGTCTGAAGAAGGTGCTGTTTGCCACAGCGCTGGGCAGCGTGGCTCTGGCTCTGACGGCTCATCAGCTGAAGAGACGCGGCCGGAAGAGGAAGCAGACCCTTGGTAAAGAAGCACAGAAACCTGTGGGGATCCCAGAACAGCTGCTGAGATCCAGCCGACCGGCCTCGCTCAAGAGAG
Seq A exon
GTGAGCGGAGTCACATTATACACTGCCTAAAGGGACAGTGACTACAAAACTCACACTCAAGTATTACGTAATATTAAAATCAAAATCAAGCAAAAAAGTATTTCAGGGGTAGTTAATGTGTCGGTGCTCTTTGGATAGGGGGATTGTCACCCTGATGAAGGCAAGTTTTGCCAAAACGCATGGGTGCAGTGCACAACAGTGCTGTTTTTAAATAATAGCCATGTTAAATTTTTTTCCATGTGCTTTTTTAGTGCCTTGGACTTATGATTTCGTATGTAATATGTTTATCTGTTATTCTTGCTATGAAATAGCCATAAGTTGCTGATCTGGCAATAAATAAACAAATAAACAAACAAACTCGTACTGCGTCCGTGCGTGGTTGCGTCTGTGAGCGTGCATCTGCATGCGTGCGTGTATGCATGCTTATGTCTGCGTGTGTGCGTATGTCTGAGTGGGTACATGTCTGTGTGGGTGCATGCATCTGCATGCTTGTGTGTGCGTGCGTCTGCATGCGTGTGTCTGAGTGCGTGCATGCATCTGCATGTTTGTGTGTGCGTGCATCTGCATGCGTGTCTGCGTGTGTGTGTGTGCTTGCATGTCTGTGCGTGCGTGCGTTTGTGCGTGTGTGTGTGCGTGTGTGTGTGCGTGTGTGTGTGCGTGTGTGTGTGCGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGCGTGTGTCAGTTTTTTTAACCATAAATACAGTTTTGCAGCAACGAAAATAAAATGAACCAATAAAAAGTGATTATACTGCAACTGTCGTATTTGTTCATAAAATATGGGATCCATTTTCATTTTTAAATCTATTCTAATTTTATATTAGTATTTTTACCATTTTACCATTTCATTTTGATCCTGTGCTATTGTATTTGTAATTGATAAGATGTTAAATAAAAAAAATACAAAAGAGAAACCCAGTGCTTCATGGTTTGTCGTGTCACCTGTAACATGTTGTACACATAACTTTGTGTGTTTCCAG
Seq C2 exon
GTCCGGTTCCTGCTCGTCAGATGATGAGTCCCAGCACGCGCAGTAATGACACACTCAGCGGTGTTTCATCAATCGCACAAAGCAAACACTCGAGTTCTTCACACAGCATCGCCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089357:ENSDART00000122699:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102654=DUF2217=PU(6.8=96.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCTCTCTCTGTTTCTCAGTCT
R:
GAGGCGATGCTGTGTGAAGAA
Band lengths:
345-1386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]